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  5. AMTR_s00001p00244170

AMTR_s00001p00244170 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.287

Description : Chitinase 3 OS=Oryza sativa subsp. japonica


Gene families : OG0000104 (Archaeplastida) Phylogenetic Tree(s): OG0000104_tree ,
OG_05_0010850 (LandPlants) Phylogenetic Tree(s): OG_05_0010850_tree ,
OG_06_0007399 (SeedPlants) Phylogenetic Tree(s): OG_06_0007399_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00244170
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AT2G43580 No alias Chitinase family protein 0.04 Archaeplastida
AT2G43590 No alias Chitinase family protein 0.03 Archaeplastida
GSVIVT01031685001 No alias Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 Archaeplastida
Gb_07464 No alias Chitinase 4 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os01g18400.1 No alias Chitinase 10 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os02g39330.1 No alias Chitinase 6 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os04g09390.1 No alias Lectin OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_741127g0010 No alias Endochitinase At2g43610 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_8960362g0010 No alias Endochitinase 1 OS=Theobroma cacao (sp|q41596|chi1_thecc : 81.6) 0.03 Archaeplastida
MA_9376357g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c16_17090V3.1 No alias homolog of carrot EP3-3 chitinase 0.03 Archaeplastida
Zm00001e007716_P001 No alias Endochitinase A OS=Zea mays (sp|p29022|chia_maize : 455.0) 0.02 Archaeplastida
Zm00001e030152_P001 No alias Basic endochitinase A OS=Secale cereale... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA Interproscan
BP GO:0006032 chitin catabolic process IEA Interproscan
BP GO:0016998 cell wall macromolecule catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000726 Glyco_hydro_19_cat 32 127
No external refs found!