AMTR_s00001p00272780 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.562

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.PHD transcription factor

Gene families : OG0001716 (Archaeplastida) Phylogenetic Tree(s): OG0001716_tree ,
OG_05_0001846 (LandPlants) Phylogenetic Tree(s): OG_05_0001846_tree ,
OG_06_0001493 (SeedPlants) Phylogenetic Tree(s): OG_06_0001493_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00001p00272780
Cluster	HCCA: Cluster_259

Target	Alias	Description	ECC score	Gene Family Method
AT3G19510	HAT3.1	Homeodomain-like protein with RING/FYVE/PHD-type zinc...	0.02	Archaeplastida
Cre12.g492200	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
GSVIVT01010860001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
Gb_17969	No alias	transcription factor (PHD)	0.04	Archaeplastida
Gb_21021	No alias	transcription factor (PHD)	0.03	Archaeplastida
LOC_Os06g12400.1	No alias	transcription factor (PHD)	0.02	Archaeplastida
MA_10436527g0010	No alias	transcription factor (PHD)	0.03	Archaeplastida
Pp3c3_29290V3.1	No alias	pathogenesis related homeodomain protein A	0.03	Archaeplastida
Zm00001e019808_P001	No alias	transcription factor (PHD)	0.05	Archaeplastida
Zm00001e027428_P001	No alias	transcription factor (PHD)	0.02	Archaeplastida
Zm00001e029056_P003	No alias	transcription factor (PHD)	0.02	Archaeplastida
Zm00001e032228_P001	No alias	transcription factor (PHD)	0.02	Archaeplastida
Zm00001e032229_P002	No alias	transcription factor (PHD)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000176	nuclear exosome (RNase complex)	IEP	Neighborhood
CC	GO:0000178	exosome (RNase complex)	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004832	valine-tRNA ligase activity	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
MF	GO:0008026	ATP-dependent helicase activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Neighborhood
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
MF	GO:0070035	purine NTP-dependent helicase activity	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
CC	GO:1905354	exoribonuclease complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR019787	Znf_PHD-finger	239	294
IPR001356	Homeobox_dom	583	628

External Links

No external refs found!

AMTR_s00001p00272780 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation