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  5. LOC_Os01g13150.1

LOC_Os01g13150.1


Description : endoribonuclease (RNase Z)


Gene families : OG0002573 (Archaeplastida) Phylogenetic Tree(s): OG0002573_tree ,
OG_05_0003746 (LandPlants) Phylogenetic Tree(s): OG_05_0003746_tree ,
OG_06_0004729 (SeedPlants) Phylogenetic Tree(s): OG_06_0004729_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g13150.1
Cluster HCCA: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00038090 evm_27.TU.AmTr_v1... RNA processing.ribonuclease activities.RNase Z endoribonuclease 0.02 Archaeplastida
Gb_33261 No alias endoribonuclease (RNase Z) 0.03 Archaeplastida
Pp3c18_12540V3.1 No alias tRNAse Z3 0.02 Archaeplastida
Zm00001e026117_P001 No alias endoribonuclease (RNase Z) 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR027794 tRNase_Z_dom 2 56
IPR001279 Metallo-B-lactamas 502 757
No external refs found!