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  5. LOC_Os01g17320.1

LOC_Os01g17320.1


Description : RNA editing factor (POCO)


Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0001224 (LandPlants) Phylogenetic Tree(s): OG_05_0001224_tree ,
OG_06_0002515 (SeedPlants) Phylogenetic Tree(s): OG_06_0002515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g17320.1
Cluster HCCA: Cluster_347

Target Alias Description ECC score Gene Family Method Actions
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.03 Archaeplastida
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.06 Archaeplastida
GSVIVT01018303001 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.02 Archaeplastida
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.04 Archaeplastida
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.06 Archaeplastida
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.04 Archaeplastida
Gb_03507 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.04 Archaeplastida
Gb_09452 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida
Gb_20238 No alias RNA editing factor (POCO) 0.03 Archaeplastida
Gb_27873 No alias RNA editing factor (POCO) 0.02 Archaeplastida
LOC_Os02g55310.1 No alias Pentatricopeptide repeat-containing protein At5g27460... 0.03 Archaeplastida
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
MA_10435629g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
MA_128872g0020 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.04 Archaeplastida
MA_29806g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
MA_492314g0010 No alias RNA editing factor (POCO) 0.02 Archaeplastida
MA_58210g0010 No alias RNA editing factor (POCO) 0.02 Archaeplastida
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
MA_77400g0010 No alias Pentatricopeptide repeat-containing protein At1g15480,... 0.02 Archaeplastida
Pp3c18_8600V3.1 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Archaeplastida
Smo412643 No alias Pentatricopeptide repeat-containing protein At1g07590,... 0.02 Archaeplastida
Smo413483 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.02 Archaeplastida
Smo416459 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.04 Archaeplastida
Solyc01g079320.4.1 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.05 Archaeplastida
Solyc01g100580.3.1 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.02 Archaeplastida
Solyc02g078330.3.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.07 Archaeplastida
Solyc06g005140.3.1 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.05 Archaeplastida
Solyc07g054090.3.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 Archaeplastida
Zm00001e012594_P001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.02 Archaeplastida
Zm00001e026211_P002 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.04 Archaeplastida
Zm00001e039746_P002 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR033443 PPR_long 420 539
IPR002885 Pentatricopeptide_repeat 265 321
No external refs found!