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  5. LOC_Os01g27650.1

LOC_Os01g27650.1


Description : Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana (sp|p93005|pp181_arath : 673.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000064 (SeedPlants) Phylogenetic Tree(s): OG_06_0000064_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g27650.1
Cluster HCCA: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.03 Archaeplastida
AMTR_s00010p00113430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g18485... 0.02 Archaeplastida
AMTR_s00010p00220510 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
AMTR_s00022p00232590 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00024p00225420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.03 Archaeplastida
AMTR_s00039p00132380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
AMTR_s00044p00169670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g17210... 0.02 Archaeplastida
AMTR_s00061p00127300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
AMTR_s00066p00131520 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
AMTR_s00078p00067180 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g46050,... 0.02 Archaeplastida
AMTR_s00130p00019530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
AMTR_s00147p00097570 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT1G04840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT2G02750 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT2G04860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT2G22070 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Archaeplastida
AT2G41080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G13770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G18970 MEF20 mitochondrial editing factor 20 0.04 Archaeplastida
AT3G21470 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.06 Archaeplastida
AT3G23330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G25970 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT4G14850 LOI1, MEF11 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G20770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G33990 EMB2758 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Archaeplastida
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G06540 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G08305 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G09950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G65570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
GSVIVT01000968001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01010125001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida
GSVIVT01015233001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
GSVIVT01021023001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01024233001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
GSVIVT01027504001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
GSVIVT01030054001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
GSVIVT01035837001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
GSVIVT01036788001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_15639 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_17092 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_21949 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_32256 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Gb_32439 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_36614 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_38068 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
LOC_Os01g25270.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
LOC_Os01g33070.1 No alias Pentatricopeptide repeat-containing protein At5g66500,... 0.02 Archaeplastida
LOC_Os02g07050.1 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
LOC_Os05g50460.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
LOC_Os06g49185.1 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
LOC_Os08g25280.1 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.06 Archaeplastida
LOC_Os08g28830.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os10g40920.1 No alias RNA editing factor (MEF13) 0.04 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_1109g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_16339g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_1673g0010 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 Archaeplastida
MA_183278g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_20782g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
MA_210823g0010 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.03 Archaeplastida
MA_2473g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_39801g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_412g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_49545g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_57048g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
MA_83898g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_8491g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_98224g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Pp3c14_16110V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Pp3c2_12230V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo101239 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 Archaeplastida
Smo113974 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo21427 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Smo34426 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.03 Archaeplastida
Smo399 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
Smo462 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
Smo61782 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo74762 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
Smo76236 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.03 Archaeplastida
Solyc01g081560.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc01g090510.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc01g110010.3.1 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.03 Archaeplastida
Solyc02g011680.4.1 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.02 Archaeplastida
Solyc02g082160.2.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Solyc02g084830.4.1 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.03 Archaeplastida
Solyc05g012630.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc06g053850.4.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Solyc06g062610.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc06g069700.4.1 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.02 Archaeplastida
Solyc08g014100.1.1 No alias Pentatricopeptide repeat-containing protein At5g43790... 0.03 Archaeplastida
Solyc09g008300.2.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.02 Archaeplastida
Solyc09g009950.4.1 No alias RNA editing factor (MEF10) 0.02 Archaeplastida
Solyc09g065710.1.1 No alias RNA editing factor (OTP86) 0.03 Archaeplastida
Solyc09g092050.4.1 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.03 Archaeplastida
Solyc10g054730.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc11g005970.1.1 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
Solyc12g042400.1.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida
Zm00001e001007_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Zm00001e002234_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e002552_P001 No alias RNA editing factor (SEL1/PDM1) 0.04 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e006544_P001 No alias No annotation 0.02 Archaeplastida
Zm00001e009484_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.02 Archaeplastida
Zm00001e011519_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
Zm00001e012607_P002 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.07 Archaeplastida
Zm00001e013713_P001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.02 Archaeplastida
Zm00001e014549_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Zm00001e014800_P001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida
Zm00001e014825_P001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Zm00001e015358_P001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.03 Archaeplastida
Zm00001e020567_P001 No alias RNA editing factor (MEF7) 0.02 Archaeplastida
Zm00001e020583_P001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
Zm00001e022858_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Zm00001e023333_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e023504_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Zm00001e027978_P001 No alias RNA editing factor (MEF1) 0.04 Archaeplastida
Zm00001e029119_P001 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.05 Archaeplastida
Zm00001e030553_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e030887_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e032242_P001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.03 Archaeplastida
Zm00001e033310_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
Zm00001e035419_P001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.06 Archaeplastida
Zm00001e035616_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e036301_P001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.04 Archaeplastida
Zm00001e036302_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e038850_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Zm00001e040920_P001 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.02 Archaeplastida
Zm00001e041246_P001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 562 583
IPR002885 Pentatricopeptide_repeat 155 183
IPR002885 Pentatricopeptide_repeat 185 213
IPR002885 Pentatricopeptide_repeat 259 284
IPR002885 Pentatricopeptide_repeat 386 432
IPR002885 Pentatricopeptide_repeat 285 330
IPR002885 Pentatricopeptide_repeat 487 533
No external refs found!