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  5. AMTR_s00002p00150300

AMTR_s00002p00150300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.118

Description : Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana


Gene families : OG0015417 (Archaeplastida) Phylogenetic Tree(s): OG0015417_tree ,
OG_05_0013831 (LandPlants) Phylogenetic Tree(s): OG_05_0013831_tree ,
OG_06_0003834 (SeedPlants) Phylogenetic Tree(s): OG_06_0003834_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00150300
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
Solyc01g088670.3.1 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 291 340
IPR002885 Pentatricopeptide_repeat 397 445
IPR002885 Pentatricopeptide_repeat 46 92
IPR002885 Pentatricopeptide_repeat 221 268
IPR002885 Pentatricopeptide_repeat 119 145
IPR002885 Pentatricopeptide_repeat 8 39
IPR002885 Pentatricopeptide_repeat 147 179
IPR002885 Pentatricopeptide_repeat 357 382
IPR002885 Pentatricopeptide_repeat 189 219
IPR002885 Pentatricopeptide_repeat 504 525
No external refs found!