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  5. AMTR_s00002p00212950

AMTR_s00002p00212950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.224

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS2 component


Gene families : OG0001651 (Archaeplastida) Phylogenetic Tree(s): OG0001651_tree ,
OG_05_0001448 (LandPlants) Phylogenetic Tree(s): OG_05_0001448_tree ,
OG_06_0001471 (SeedPlants) Phylogenetic Tree(s): OG_06_0001471_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00212950
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AT1G58380 XW6 Ribosomal protein S5 family protein 0.06 Archaeplastida
AT1G58684 No alias Ribosomal protein S5 family protein 0.06 Archaeplastida
AT1G58983 No alias Ribosomal protein S5 family protein 0.06 Archaeplastida
AT1G59359 No alias Ribosomal protein S5 family protein 0.06 Archaeplastida
AT2G41840 No alias Ribosomal protein S5 family protein 0.28 Archaeplastida
AT3G57490 No alias Ribosomal protein S5 family protein 0.04 Archaeplastida
Cpa|evm.model.tig00020961.135 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Cre01.g039250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
GSVIVT01033299001 No alias 40S ribosomal protein S2-4 OS=Arabidopsis thaliana 0.11 Archaeplastida
Gb_04606 No alias component RPS2 of SSU proteome 0.06 Archaeplastida
Gb_04608 No alias component RPS2 of SSU proteome 0.07 Archaeplastida
Gb_04609 No alias component RPS2 of SSU proteome 0.06 Archaeplastida
LOC_Os03g59310.1 No alias component RPS2 of SSU proteome 0.15 Archaeplastida
LOC_Os07g10660.1 No alias component RPS2 of SSU proteome 0.11 Archaeplastida
MA_158470g0010 No alias component RPS2 of SSU proteome 0.11 Archaeplastida
Mp5g15970.1 No alias component RPS2 of SSU proteome 0.21 Archaeplastida
Pp3c20_18740V3.1 No alias Ribosomal protein S5 family protein 0.26 Archaeplastida
Pp3c23_8410V3.1 No alias Ribosomal protein S5 family protein 0.25 Archaeplastida
Pp3c24_5780V3.1 No alias Ribosomal protein S5 family protein 0.27 Archaeplastida
Smo67484 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
Solyc04g063290.3.1 No alias component RPS2 of SSU proteome 0.26 Archaeplastida
Solyc04g074300.3.1 No alias component RPS2 of SSU proteome 0.28 Archaeplastida
Zm00001e006090_P001 No alias component RPS2 of SSU proteome 0.1 Archaeplastida
Zm00001e011816_P001 No alias component RPS2 of SSU proteome 0.11 Archaeplastida
Zm00001e033091_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005381 iron ion transmembrane transporter activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
CC GO:0005853 eukaryotic translation elongation factor 1 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0015093 ferrous iron transmembrane transporter activity IEP Neighborhood
BP GO:0015684 ferrous iron transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
MF GO:0072509 divalent inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
InterPro domains Description Start Stop
IPR013810 Ribosomal_S5_N 88 154
IPR005324 Ribosomal_S5_C 171 237
No external refs found!