- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Protodermal factor 1 OS=Arabidopsis thaliana (sp|q9s728|pdf1_arath : 96.7)
Gene families : OG0001668 (Archaeplastida) Phylogenetic Tree(s): OG0001668_tree ,
OG_05_0001072 (LandPlants) Phylogenetic Tree(s): OG_05_0001072_tree ,
OG_06_0004253 (SeedPlants) Phylogenetic Tree(s): OG_06_0004253_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os01g52690.1 | |
| Cluster | HCCA: Cluster_8 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00067p00030870 | evm_27.TU.AmTr_v1... | No description available | 0.02 | Archaeplastida | |
| LOC_Os06g35970.1 | No alias | Protodermal factor 1 OS=Arabidopsis thaliana... | 0.03 | Archaeplastida | |
| Pp3c4_16960V3.1 | No alias | No annotation | 0.04 | Archaeplastida | |
| Zm00001e014410_P001 | No alias | Protodermal factor 1 OS=Arabidopsis thaliana... | 0.03 | Archaeplastida | |
| Zm00001e019923_P004 | No alias | Protodermal factor 1 OS=Arabidopsis thaliana... | 0.08 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000096 | sulfur amino acid metabolic process | IEP | Neighborhood |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Neighborhood |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Neighborhood |
| BP | GO:0005996 | monosaccharide metabolic process | IEP | Neighborhood |
| BP | GO:0006534 | cysteine metabolic process | IEP | Neighborhood |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | Neighborhood |
| MF | GO:0008171 | O-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0009069 | serine family amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0009092 | homoserine metabolic process | IEP | Neighborhood |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Neighborhood |
| BP | GO:0019321 | pentose metabolic process | IEP | Neighborhood |
| BP | GO:0019346 | transsulfuration | IEP | Neighborhood |
| BP | GO:0019566 | arabinose metabolic process | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0044281 | small molecule metabolic process | IEP | Neighborhood |
| BP | GO:0046373 | L-arabinose metabolic process | IEP | Neighborhood |
| MF | GO:0046556 | alpha-L-arabinofuranosidase activity | IEP | Neighborhood |
| MF | GO:0046983 | protein dimerization activity | IEP | Neighborhood |
| BP | GO:0050667 | homocysteine metabolic process | IEP | Neighborhood |
| BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
| BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
| BP | GO:0065007 | biological regulation | IEP | Neighborhood |
| MF | GO:0140110 | transcription regulator activity | IEP | Neighborhood |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |