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  5. AMTR_s00002p00215130

AMTR_s00002p00215130 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.228

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP I/II transcription factor


Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree ,
OG_06_0000101 (SeedPlants) Phylogenetic Tree(s): OG_06_0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00215130
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
AT3G01470 ATHB1, ATHB-1,... homeobox 1 0.03 Archaeplastida
AT5G03790 HB51, ATHB51, LMI1 homeobox 51 0.03 Archaeplastida
LOC_Os03g07450.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
LOC_Os04g45810.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
LOC_Os08g32080.1 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
LOC_Os08g32085.1 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
LOC_Os09g21180.1 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida
LOC_Os09g35910.1 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
MA_132936g0010 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
MA_60543g0010 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
Pp3c12_21760V3.1 No alias homeobox protein 16 0.02 Archaeplastida
Pp3c17_18190V3.1 No alias homeobox protein 16 0.03 Archaeplastida
Pp3c7_2100V3.1 No alias Homeobox-leucine zipper protein family 0.02 Archaeplastida
Smo19476 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Solyc01g010600.4.1 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Solyc09g008810.3.1 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Zm00001e000659_P001 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida
Zm00001e023458_P003 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Zm00001e034785_P001 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida
Zm00001e038901_P001 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0019321 pentose metabolic process IEP Neighborhood
BP GO:0019566 arabinose metabolic process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0046373 L-arabinose metabolic process IEP Neighborhood
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 42 95
IPR003106 Leu_zip_homeo 97 139
No external refs found!