LOC_Os01g54590.1

Description : A-class RAB GTPase

Gene families : OG0000173 (Archaeplastida) Phylogenetic Tree(s): OG0000173_tree ,
OG_05_0000161 (LandPlants) Phylogenetic Tree(s): OG_05_0000161_tree ,
OG_06_0000127 (SeedPlants) Phylogenetic Tree(s): OG_06_0000127_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g54590.1
Cluster	HCCA: Cluster_246

Target	Alias	Description	ECC score	Gene Family Method
AT1G16920	ATRABA1B, RAB11, RABA1b	RAB GTPase homolog A1B	0.03	Archaeplastida
AT1G73640	RABA6a, AtRABA6a	RAB GTPase homolog A6A	0.11	Archaeplastida
AT2G33870	ArRABA1h	RAB GTPase homolog A1H	0.02	Archaeplastida
GSVIVT01020651001	No alias	Ras-related protein RABA1e OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01027396001	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.03	Archaeplastida
Gb_03447	No alias	A-class RAB GTPase	0.03	Archaeplastida
Gb_12544	No alias	A-class RAB GTPase	0.02	Archaeplastida
Gb_23200	No alias	A-class RAB GTPase	0.03	Archaeplastida
LOC_Os03g62600.1	No alias	A-class RAB GTPase	0.03	Archaeplastida
Pp3c23_7840V3.1	No alias	RAB GTPase homolog A4D	0.01	Archaeplastida
Smo146310	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.02	Archaeplastida
Solyc01g096220.3.1	No alias	A-class RAB GTPase	0.03	Archaeplastida
Zm00001e000673_P001	No alias	A-class RAB GTPase	0.05	Archaeplastida
Zm00001e006316_P001	No alias	A-class RAB GTPase	0.03	Archaeplastida
Zm00001e020213_P001	No alias	A-class RAB GTPase	0.03	Archaeplastida
Zm00001e027669_P001	No alias	A-class RAB GTPase	0.02	Archaeplastida
Zm00001e031368_P002	No alias	A-class RAB GTPase	0.04	Archaeplastida
Zm00001e038828_P001	No alias	A-class RAB GTPase	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004568	chitinase activity	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005484	SNAP receptor activity	IEP	Neighborhood
BP	GO:0006022	aminoglycan metabolic process	IEP	Neighborhood
BP	GO:0006026	aminoglycan catabolic process	IEP	Neighborhood
BP	GO:0006030	chitin metabolic process	IEP	Neighborhood
BP	GO:0006032	chitin catabolic process	IEP	Neighborhood
BP	GO:0006040	amino sugar metabolic process	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	IEP	Neighborhood
MF	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Neighborhood
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
MF	GO:0017048	Rho GTPase binding	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
MF	GO:0033897	ribonuclease T2 activity	IEP	Neighborhood
BP	GO:0042737	drug catabolic process	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0046348	amino sugar catabolic process	IEP	Neighborhood
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Neighborhood
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	20	180

External Links

No external refs found!

LOC_Os01g54590.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation