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Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.633
Description : RNA processing.RNA modification.pseudouridylation.TruD-type tRNA pseudouridine synthase
Gene families : OG0004939 (Archaeplastida) Phylogenetic Tree(s): OG0004939_tree ,
OG_05_0005373 (LandPlants) Phylogenetic Tree(s): OG_05_0005373_tree ,
OG_06_0005807 (SeedPlants) Phylogenetic Tree(s): OG_06_0005807_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00002p00271620 | |
| Cluster | HCCA: Cluster_206 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| BP | GO:0009451 | RNA modification | IEA | Interproscan |
| MF | GO:0009982 | pseudouridine synthase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| MF | GO:0001871 | pattern binding | IEP | Neighborhood |
| MF | GO:0004611 | phosphoenolpyruvate carboxykinase activity | IEP | Neighborhood |
| MF | GO:0004612 | phosphoenolpyruvate carboxykinase (ATP) activity | IEP | Neighborhood |
| MF | GO:0004672 | protein kinase activity | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| BP | GO:0005996 | monosaccharide metabolic process | IEP | Neighborhood |
| BP | GO:0006006 | glucose metabolic process | IEP | Neighborhood |
| BP | GO:0006094 | gluconeogenesis | IEP | Neighborhood |
| BP | GO:0006468 | protein phosphorylation | IEP | Neighborhood |
| BP | GO:0007034 | vacuolar transport | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| BP | GO:0016051 | carbohydrate biosynthetic process | IEP | Neighborhood |
| MF | GO:0016301 | kinase activity | IEP | Neighborhood |
| BP | GO:0016310 | phosphorylation | IEP | Neighborhood |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Neighborhood |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | Neighborhood |
| MF | GO:0016831 | carboxy-lyase activity | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| BP | GO:0019318 | hexose metabolic process | IEP | Neighborhood |
| BP | GO:0019319 | hexose biosynthetic process | IEP | Neighborhood |
| MF | GO:0030246 | carbohydrate binding | IEP | Neighborhood |
| MF | GO:0030247 | polysaccharide binding | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| CC | GO:0030904 | retromer complex | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| BP | GO:0046364 | monosaccharide biosynthetic process | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| MF | GO:2001070 | starch binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001656 | PsdUridine_synth_TruD | 211 | 553 |
| No external refs found! |