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  5. LOC_Os02g50799.1

LOC_Os02g50799.1


Description : NUA nucleoporin of nuclear pore complex


Gene families : OG0003427 (Archaeplastida) Phylogenetic Tree(s): OG0003427_tree ,
OG_05_0004010 (LandPlants) Phylogenetic Tree(s): OG_05_0004010_tree ,
OG_06_0005364 (SeedPlants) Phylogenetic Tree(s): OG_06_0005364_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g50799.1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00124730 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.05 Archaeplastida
AT1G79280 NUA, AtTPR nuclear pore anchor 0.04 Archaeplastida
Cpa|evm.model.tig00000404.46 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 Archaeplastida
GSVIVT01036698001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.06 Archaeplastida
Gb_36757 No alias NUA nucleoporin of nuclear pore complex 0.04 Archaeplastida
MA_10287420g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10435343g0040 No alias NUA nucleoporin of nuclear pore complex 0.07 Archaeplastida
MA_109011g0010 No alias NUA nucleoporin of nuclear pore complex 0.06 Archaeplastida
MA_113769g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_125713g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_33097g0010 No alias Nuclear-pore anchor OS=Arabidopsis thaliana... 0.07 Archaeplastida
MA_929786g0010 No alias NUA nucleoporin of nuclear pore complex 0.03 Archaeplastida
Mp2g14600.1 No alias NUA nucleoporin of nuclear pore complex 0.06 Archaeplastida
Pp3c8_8020V3.1 No alias nuclear pore anchor 0.08 Archaeplastida
Smo444132 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.06 Archaeplastida
Solyc06g053570.2.1 No alias NUA nucleoporin of nuclear pore complex 0.08 Archaeplastida
Solyc06g053590.4.1 No alias No annotation 0.03 Archaeplastida
Zm00001e023916_P004 No alias NUA nucleoporin of nuclear pore complex 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!