- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.104
Description : Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component
Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0000162 (LandPlants) Phylogenetic Tree(s): OG_05_0000162_tree ,
OG_06_0000359 (SeedPlants) Phylogenetic Tree(s): OG_06_0000359_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00003p00136650 | |
| Cluster | HCCA: Cluster_23 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| GSVIVT01028204001 | No alias | Chlorophyll a-b binding protein 16, chloroplastic... | 0.05 | Archaeplastida | |
| Gb_00063 | No alias | component LHCb1/2/3 of LHC-II complex | 0.04 | Archaeplastida | |
| Gb_05853 | No alias | component LHCb1/2/3 of LHC-II complex | 0.03 | Archaeplastida | |
| LOC_Os01g41710.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.03 | Archaeplastida | |
| MA_10431300g0020 | No alias | component LHCb1/2/3 of LHC-II complex | 0.04 | Archaeplastida | |
| MA_10431493g0020 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| MA_9388552g0010 | No alias | Chlorophyll a-b binding protein type 2 member 2... | 0.04 | Archaeplastida | |
| MA_97315g0010 | No alias | component LHCb1/2/3 of LHC-II complex | 0.03 | Archaeplastida | |
| Mp7g05530.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.02 | Archaeplastida | |
| Mp7g05980.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.03 | Archaeplastida | |
| Mp7g09340.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.02 | Archaeplastida | |
| Pp3c10_3020V3.1 | No alias | photosystem II light harvesting complex gene 2.3 | 0.03 | Archaeplastida | |
| Pp3c22_5610V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.04 | Archaeplastida | |
| Pp3c2_36190V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.04 | Archaeplastida | |
| Pp3c2_36380V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.03 | Archaeplastida | |
| Pp3c2_36500V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.04 | Archaeplastida | |
| Pp3c2_36570V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.06 | Archaeplastida | |
| Pp3c5_7150V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.03 | Archaeplastida | |
| Smo446130 | No alias | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.03 | Archaeplastida | |
| Smo75552 | No alias | Photosynthesis.photophosphorylation.photosystem... | 0.03 | Archaeplastida | |
| Solyc02g070980.1.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.04 | Archaeplastida | |
| Solyc02g070990.1.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.04 | Archaeplastida | |
| Zm00001e020625_P001 | No alias | Chlorophyll a-b binding protein 48, chloroplastic OS=Zea... | 0.05 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003824 | catalytic activity | IEP | Neighborhood |
| MF | GO:0004175 | endopeptidase activity | IEP | Neighborhood |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Neighborhood |
| MF | GO:0005506 | iron ion binding | IEP | Neighborhood |
| BP | GO:0006508 | proteolysis | IEP | Neighborhood |
| BP | GO:0006629 | lipid metabolic process | IEP | Neighborhood |
| BP | GO:0006633 | fatty acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| MF | GO:0008233 | peptidase activity | IEP | Neighborhood |
| MF | GO:0008237 | metallopeptidase activity | IEP | Neighborhood |
| MF | GO:0009055 | electron transfer activity | IEP | Neighborhood |
| MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | Neighborhood |
| MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
| MF | GO:0020037 | heme binding | IEP | Neighborhood |
| MF | GO:0042802 | identical protein binding | IEP | Neighborhood |
| BP | GO:0043086 | negative regulation of catalytic activity | IEP | Neighborhood |
| BP | GO:0044092 | negative regulation of molecular function | IEP | Neighborhood |
| MF | GO:0046906 | tetrapyrrole binding | IEP | Neighborhood |
| MF | GO:0048037 | cofactor binding | IEP | Neighborhood |
| BP | GO:0050790 | regulation of catalytic activity | IEP | Neighborhood |
| BP | GO:0055114 | oxidation-reduction process | IEP | Neighborhood |
| BP | GO:0065009 | regulation of molecular function | IEP | Neighborhood |
| MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 29 | 195 |
| No external refs found! |