LOC_Os03g08020.1

Description : aminoacyl-tRNA binding factor (eEF1A)

Gene families : OG0000191 (Archaeplastida) Phylogenetic Tree(s): OG0000191_tree ,
OG_05_0000317 (LandPlants) Phylogenetic Tree(s): OG_05_0000317_tree ,
OG_06_0000423 (SeedPlants) Phylogenetic Tree(s): OG_06_0000423_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g08020.1
Cluster	HCCA: Cluster_94

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00072310	evm_27.TU.AmTr_v1...	Protein biosynthesis.translation elongation.eEF1A...	0.05	Archaeplastida
AT1G07920	No alias	GTP binding Elongation factor Tu family protein	0.03	Archaeplastida
AT1G07930	No alias	GTP binding Elongation factor Tu family protein	0.05	Archaeplastida
AT1G07940	No alias	GTP binding Elongation factor Tu family protein	0.04	Archaeplastida
AT5G60390	No alias	GTP binding Elongation factor Tu family protein	0.2	Archaeplastida
Cpa\|evm.model.tig00021352.57	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.05	Archaeplastida
Cre06.g284750	No alias	Protein biosynthesis.translation termination.eRF3...	0.06	Archaeplastida
Cre12.g498600	No alias	Elongation factor 1-alpha OS=Glycine max	0.01	Archaeplastida
GSVIVT01025638001	No alias	Elongation factor 1-alpha OS=Zea mays	0.04	Archaeplastida
Gb_17471	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.04	Archaeplastida
Gb_22919	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.02	Archaeplastida
MA_59994g0010	No alias	Elongation factor 1-alpha OS=Glycine max...	0.03	Archaeplastida
MA_651220g0010	No alias	Elongation factor 1-alpha OS=Oryza sativa subsp....	0.04	Archaeplastida
MA_7085077g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
Mp3g23400.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.21	Archaeplastida
Pp3c1_23850V3.1	No alias	GTP binding Elongation factor Tu family protein	0.04	Archaeplastida
Pp3c1_23920V3.1	No alias	GTP binding Elongation factor Tu family protein	0.12	Archaeplastida
Pp3c27_2160V3.1	No alias	Translation elongation factor EF1A/initiation factor...	0.02	Archaeplastida
Pp3c2_6650V3.1	No alias	GTP binding Elongation factor Tu family protein	0.05	Archaeplastida
Pp3c2_6770V3.1	No alias	GTP binding Elongation factor Tu family protein	0.06	Archaeplastida
Smo169717	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.03	Archaeplastida
Smo171512	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.06	Archaeplastida
Smo270693	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.04	Archaeplastida
Solyc06g005060.3.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.07	Archaeplastida
Solyc06g009970.3.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.02	Archaeplastida
Solyc06g069020.4.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc11g150146.1.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.04	Archaeplastida
Zm00001e026762_P001	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.13	Archaeplastida
Zm00001e026763_P003	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.13	Archaeplastida
Zm00001e030598_P002	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.07	Archaeplastida
Zm00001e031389_P001	No alias	no hits & (original description: none)	0.08	Archaeplastida
Zm00001e031390_P004	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.15	Archaeplastida
Zm00001e031391_P002	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.14	Archaeplastida
Zm00001e031407_P001	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.11	Archaeplastida
Zm00001e037355_P001	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.12	Archaeplastida
Zm00001e040640_P002	No alias	eRF3 peptide release factor	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Neighborhood
BP	GO:0000105	histidine biosynthetic process	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Neighborhood
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005737	cytoplasm	IEP	Neighborhood
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006486	protein glycosylation	IEP	Neighborhood
BP	GO:0006487	protein N-linked glycosylation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0006547	histidine metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
BP	GO:0008150	biological_process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
MF	GO:0016874	ligase activity	IEP	Neighborhood
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Neighborhood
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Neighborhood
BP	GO:0018196	peptidyl-asparagine modification	IEP	Neighborhood
BP	GO:0018279	protein N-linked glycosylation via asparagine	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0043038	amino acid activation	IEP	Neighborhood
BP	GO:0043039	tRNA aminoacylation	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043413	macromolecule glycosylation	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Neighborhood
MF	GO:0070001	aspartic-type peptidase activity	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004160	Transl_elong_EFTu/EF1A_C	322	429
IPR000795	TF_GTP-bd_dom	5	222
IPR004161	EFTu-like_2	248	313

External Links

No external refs found!

LOC_Os03g08020.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation