LOC_Os03g08960.1

Description : transcription factor (HD-ZIP I/II)

Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree ,
OG_06_0000101 (SeedPlants) Phylogenetic Tree(s): OG_06_0000101_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g08960.1
Cluster	HCCA: Cluster_255

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00214750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
AMTR_s00027p00144540	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
AT2G46680	HB-7, ATHB-7, ATHB7	homeobox 7	0.03	Archaeplastida
AT3G01220	ATHB20, HB20	homeobox protein 20	0.05	Archaeplastida
AT3G01470	ATHB1, ATHB-1,...	homeobox 1	0.04	Archaeplastida
AT3G61890	HB-12, ATHB-12, ATHB12	homeobox 12	0.03	Archaeplastida
AT4G36740	ATHB40, HB40, HB-5	homeobox protein 40	0.03	Archaeplastida
AT5G15150	ATHB3, HB-3, ATHB-3, HAT7	homeobox 3	0.04	Archaeplastida
AT5G53980	ATHB52, HB52	homeobox protein 52	0.06	Archaeplastida
GSVIVT01020033001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01027407001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
GSVIVT01038619001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
Gb_35116	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Gb_35959	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
LOC_Os02g43330.1	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
LOC_Os02g49700.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
LOC_Os03g07450.1	No alias	transcription factor (HD-ZIP I/II)	0.07	Archaeplastida
LOC_Os04g45810.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os08g32080.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os08g32085.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
LOC_Os10g26500.1	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
MA_10428916g0010	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
MA_130615g0020	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
MA_132936g0010	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
MA_19453g0050	No alias	Homeobox-leucine zipper protein HAT5 OS=Arabidopsis...	0.03	Archaeplastida
MA_9241385g0010	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Mp3g02320.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Pp3c11_23440V3.1	No alias	homeobox 1	0.03	Archaeplastida
Pp3c12_21760V3.1	No alias	homeobox protein 16	0.02	Archaeplastida
Pp3c14_21620V3.1	No alias	homeobox protein 6	0.01	Archaeplastida
Pp3c16_21410V3.1	No alias	homeobox 1	0.02	Archaeplastida
Pp3c1_37070V3.1	No alias	homeobox protein 16	0.05	Archaeplastida
Pp3c25_13450V3.1	No alias	homeobox 1	0.01	Archaeplastida
Pp3c2_4940V3.1	No alias	Homeobox-leucine zipper protein family	0.02	Archaeplastida
Pp3c5_27150V3.1	No alias	homeobox protein 16	0.03	Archaeplastida
Pp3c7_2100V3.1	No alias	Homeobox-leucine zipper protein family	0.03	Archaeplastida
Pp3c8_440V3.1	No alias	homeobox 3	0.03	Archaeplastida
Smo18217	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
Solyc01g010600.4.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Solyc02g067410.2.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc02g085630.3.1	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Solyc02g086930.4.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Solyc02g087840.3.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Solyc03g034120.3.1	No alias	transcription factor (HD-ZIP I/II)	0.01	Archaeplastida
Solyc03g082550.3.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Solyc03g113270.3.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Solyc04g005800.3.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Solyc05g006980.3.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Solyc05g007180.3.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Solyc06g053220.3.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Solyc07g062790.1.1	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e002803_P001	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Zm00001e004824_P001	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Zm00001e007381_P001	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e010004_P002	No alias	transcription factor (HD-ZIP I/II)	0.01	Archaeplastida
Zm00001e010218_P001	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Zm00001e010637_P001	No alias	transcription factor (HD-ZIP I/II)	0.01	Archaeplastida
Zm00001e012829_P001	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e015717_P003	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Zm00001e022379_P002	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e034785_P001	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Zm00001e038833_P001	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e038901_P001	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Zm00001e041342_P001	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004427	inorganic diphosphatase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004568	chitinase activity	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0006022	aminoglycan metabolic process	IEP	Neighborhood
BP	GO:0006026	aminoglycan catabolic process	IEP	Neighborhood
BP	GO:0006030	chitin metabolic process	IEP	Neighborhood
BP	GO:0006032	chitin catabolic process	IEP	Neighborhood
BP	GO:0006040	amino sugar metabolic process	IEP	Neighborhood
MF	GO:0008061	chitin binding	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Neighborhood
BP	GO:0042737	drug catabolic process	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0046348	amino sugar catabolic process	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
BP	GO:0051259	protein complex oligomerization	IEP	Neighborhood
BP	GO:0051260	protein homooligomerization	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	73	125
IPR003106	Leu_zip_homeo	127	168

External Links

No external refs found!

LOC_Os03g08960.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation