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  5. LOC_Os03g12000.1

LOC_Os03g12000.1


Description : DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa subsp. japonica (sp|q10pv9|rh47b_orysj : 1096.0)


Gene families : OG0006412 (Archaeplastida) Phylogenetic Tree(s): OG0006412_tree ,
OG_05_0007936 (LandPlants) Phylogenetic Tree(s): OG_05_0007936_tree ,
OG_06_0010076 (SeedPlants) Phylogenetic Tree(s): OG_06_0010076_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g12000.1
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00030480 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa... 0.03 Archaeplastida
AT1G12770 ISE1, EMB1586 P-loop containing nucleoside triphosphate hydrolases... 0.13 Archaeplastida
Cre07.g349300 No alias DEAD-box ATP-dependent RNA helicase 47, mitochondrial... 0.05 Archaeplastida
MA_495935g0010 No alias DEAD-box ATP-dependent RNA helicase 47, mitochondrial... 0.03 Archaeplastida
Mp2g16530.1 No alias DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa... 0.08 Archaeplastida
Smo43111 No alias DEAD-box ATP-dependent RNA helicase 47, mitochondrial... 0.02 Archaeplastida
Solyc08g080550.1.1 No alias DEAD-box ATP-dependent RNA helicase 47, mitochondrial... 0.11 Archaeplastida
Zm00001e015207_P001 No alias DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004019 adenylosuccinate synthase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 420 526
IPR011545 DEAD/DEAH_box_helicase_dom 155 348
No external refs found!