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  5. LOC_Os03g17084.1

LOC_Os03g17084.1


Description : histone (H2B)


Gene families : OG0000186 (Archaeplastida) Phylogenetic Tree(s): OG0000186_tree ,
OG_05_0079794 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0068618 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g17084.1
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00228620 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
AMTR_s00012p00085300 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.08 Archaeplastida
AMTR_s00012p00085960 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
AMTR_s00012p00088340 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
AT1G07790 HTB1 Histone superfamily protein 0.04 Archaeplastida
AT3G45980 HTB9, H2B Histone superfamily protein 0.04 Archaeplastida
AT3G46030 HTB11 Histone superfamily protein 0.19 Archaeplastida
AT5G22880 HTB2, H2B histone B2 0.04 Archaeplastida
AT5G59910 HTB4 Histone superfamily protein 0.05 Archaeplastida
Cpa|evm.model.tig00000944.18 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre06.g264800 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre06.g264900 No alias Chromatin organisation.histones.H2B-type histone 0.22 Archaeplastida
Cre06.g265400 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g266750 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre06.g268100 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g268250 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre06.g271376 No alias Chromatin organisation.histones.H2B-type histone 0.2 Archaeplastida
Cre06.g273850 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
Cre06.g274250 No alias Chromatin organisation.histones.H2B-type histone 0.14 Archaeplastida
Cre06.g274750 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre06.g275800 No alias Chromatin organisation.histones.H2B-type histone 0.09 Archaeplastida
Cre06.g276550 No alias Chromatin organisation.histones.H2B-type histone 0.25 Archaeplastida
Cre06.g276900 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
Cre12.g504550 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre12.g504700 No alias Chromatin organisation.histones.H2B-type histone 0.16 Archaeplastida
Cre12.g505600 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
Cre12.g506200 No alias Chromatin organisation.histones.H2B-type histone 0.17 Archaeplastida
Cre13.g570050 No alias Chromatin organisation.histones.H2B-type histone 0.27 Archaeplastida
Cre17.g709150 No alias Chromatin organisation.histones.H2B-type histone 0.24 Archaeplastida
Cre17.g710450 No alias Chromatin organisation.histones.H2B-type histone 0.25 Archaeplastida
Cre17.g711750 No alias Chromatin organisation.histones.H2B-type histone 0.22 Archaeplastida
Cre17.g713450 No alias Chromatin organisation.histones.H2B-type histone 0.23 Archaeplastida
Cre17.g714050 No alias Chromatin organisation.histones.H2B-type histone 0.21 Archaeplastida
GSVIVT01016164001 No alias Chromatin organisation.histones.H2B-type histone 0.18 Archaeplastida
GSVIVT01025021001 No alias Chromatin organisation.histones.H2B-type histone 0.09 Archaeplastida
GSVIVT01025025001 No alias Chromatin organisation.histones.H2B-type histone 0.11 Archaeplastida
Gb_02245 No alias histone (H2B) 0.15 Archaeplastida
Gb_12082 No alias histone (H2B) 0.07 Archaeplastida
Gb_12096 No alias histone (H2B) 0.04 Archaeplastida
Gb_25549 No alias histone (H2B) 0.06 Archaeplastida
Gb_26315 No alias histone (H2B) 0.17 Archaeplastida
Gb_32754 No alias histone (H2B) 0.09 Archaeplastida
Gb_41617 No alias histone (H2B) 0.04 Archaeplastida
MA_10151143g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_10428006g0010 No alias histone (H2B) 0.08 Archaeplastida
MA_10435143g0010 No alias histone (H2B) 0.17 Archaeplastida
MA_10435143g0020 No alias histone (H2B) 0.06 Archaeplastida
MA_10436516g0010 No alias histone (H2B) 0.04 Archaeplastida
MA_10436516g0020 No alias histone (H2B) 0.07 Archaeplastida
MA_38565g0010 No alias histone (H2B) 0.05 Archaeplastida
MA_454575g0010 No alias histone (H2B) 0.05 Archaeplastida
MA_6078786g0010 No alias histone (H2B) 0.07 Archaeplastida
MA_77198g0010 No alias histone (H2B) 0.04 Archaeplastida
MA_8065g0010 No alias histone (H2B) 0.06 Archaeplastida
MA_9293473g0010 No alias histone (H2B) 0.09 Archaeplastida
Mp4g13450.1 No alias histone (H2B) 0.04 Archaeplastida
Mp6g04070.1 No alias histone (H2B) 0.16 Archaeplastida
Mp6g07010.1 No alias histone (H2B) 0.03 Archaeplastida
Pp3c12_7610V3.1 No alias Histone superfamily protein 0.2 Archaeplastida
Pp3c13_23540V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c14_21050V3.1 No alias Histone superfamily protein 0.08 Archaeplastida
Pp3c17_15780V3.1 No alias Histone superfamily protein 0.05 Archaeplastida
Pp3c17_15800V3.1 No alias Histone superfamily protein 0.02 Archaeplastida
Pp3c6_27740V3.1 No alias Histone superfamily protein 0.05 Archaeplastida
Smo182308 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Solyc02g038690.1.1 No alias histone (H2B) 0.2 Archaeplastida
Solyc03g071620.2.1 No alias histone (H2B) 0.15 Archaeplastida
Solyc05g055440.1.1 No alias histone (H2B) 0.19 Archaeplastida
Solyc06g074780.1.1 No alias histone (H2B) 0.12 Archaeplastida
Solyc06g074790.2.1 No alias histone (H2B) 0.22 Archaeplastida
Solyc06g075800.1.1 No alias histone (H2B) 0.1 Archaeplastida
Solyc11g007920.1.1 No alias histone (H2B) 0.17 Archaeplastida
Solyc11g007930.1.1 No alias histone (H2B) 0.21 Archaeplastida
Solyc11g066430.2.1 No alias histone (H2B) 0.22 Archaeplastida
Solyc12g013510.1.1 No alias histone (H2B) 0.1 Archaeplastida
Zm00001e004028_P001 No alias histone (H2B) 0.15 Archaeplastida
Zm00001e009857_P001 No alias histone (H2B) 0.11 Archaeplastida
Zm00001e010906_P002 No alias histone (H2B) 0.12 Archaeplastida
Zm00001e016882_P001 No alias histone (H2B) 0.18 Archaeplastida
Zm00001e019346_P001 No alias histone (H2B) 0.1 Archaeplastida
Zm00001e020484_P002 No alias histone (H2B) 0.17 Archaeplastida
Zm00001e022201_P001 No alias histone (H2B) 0.12 Archaeplastida
Zm00001e023342_P001 No alias histone (H2B) 0.23 Archaeplastida
Zm00001e027803_P001 No alias histone (H2B) 0.21 Archaeplastida
Zm00001e028779_P003 No alias histone (H2B) 0.09 Archaeplastida
Zm00001e034226_P001 No alias histone (H2B) 0.11 Archaeplastida
Zm00001e038466_P001 No alias histone (H2B) 0.3 Archaeplastida
Zm00001e039057_P002 No alias histone (H2B) 0.07 Archaeplastida
Zm00001e041296_P001 No alias histone (H2B) 0.08 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
CC GO:0005750 mitochondrial respiratory chain complex III IEP Neighborhood
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045275 respiratory chain complex III IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098803 respiratory chain complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 128
No external refs found!