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  5. AMTR_s00003p00261700

AMTR_s00003p00261700 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.347

Description : Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana


Gene families : OG0003733 (Archaeplastida) Phylogenetic Tree(s): OG0003733_tree ,
OG_05_0003722 (LandPlants) Phylogenetic Tree(s): OG_05_0003722_tree ,
OG_06_0003603 (SeedPlants) Phylogenetic Tree(s): OG_06_0003603_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00261700
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AT1G73710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Gb_07316 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.05 Archaeplastida
Gb_11434 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.04 Archaeplastida
Gb_20571 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 Archaeplastida
LOC_Os03g06710.1 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.04 Archaeplastida
LOC_Os07g28900.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 Archaeplastida
MA_102823g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_10426616g0010 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.02 Archaeplastida
MA_118886g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
MA_185599g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_547597g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc07g054480.3.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 Archaeplastida
Zm00001e000477_P001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016841 ammonia-lyase activity IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 474 496
IPR002885 Pentatricopeptide_repeat 507 554
IPR002885 Pentatricopeptide_repeat 611 660
IPR002885 Pentatricopeptide_repeat 330 375
IPR002885 Pentatricopeptide_repeat 857 885
IPR002885 Pentatricopeptide_repeat 687 713
IPR002885 Pentatricopeptide_repeat 579 609
IPR002885 Pentatricopeptide_repeat 754 781
IPR002885 Pentatricopeptide_repeat 298 328
IPR002885 Pentatricopeptide_repeat 720 748
IPR002885 Pentatricopeptide_repeat 891 919
IPR002885 Pentatricopeptide_repeat 165 194
IPR002885 Pentatricopeptide_repeat 403 433
No external refs found!