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  5. LOC_Os03g28080.1

LOC_Os03g28080.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0014032 (SeedPlants) Phylogenetic Tree(s): OG_06_0014032_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g28080.1
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00161410 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00025p00229930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00044p00112360 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00044p00211560 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00061p00174460 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT1G22500 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT1G63840 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT1G67856 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G17450 RHA3A RING-H2 finger A3A 0.03 Archaeplastida
AT2G17730 NIP2 NEP-interacting protein 2 0.03 Archaeplastida
AT2G37580 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G44578 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G10910 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT3G61550 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G17245 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G38140 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G01880 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G05280 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G06490 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G07040 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G41400 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G58580 ATL63, TL63 TOXICOS EN LEVADURA 63 0.03 Archaeplastida
GSVIVT01000538001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01009098001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01012020001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01028038001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
Gb_05386 No alias RHA2 signal transducer of abscisic acid perception 0.02 Archaeplastida
Gb_14777 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_14778 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_15836 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_35043 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_36232 No alias IDF1 iron uptake IRT1-ubiquitin ligase 0.03 Archaeplastida
LOC_Os01g11480.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os01g11500.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os01g55110.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os02g33720.1 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g45780.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g46100.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os03g05560.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os04g37740.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os08g38460.1 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
MA_10021g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_10244600g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10426834g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_10435495g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_114175g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_125507g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_133839g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_167410g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_214717g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_25345g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_31462g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_31736g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_43543g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_55185g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_6931619g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_711804g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_7120568g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_759689g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_92400g0010 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Mp4g04600.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp5g08270.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Pp3c17_13190V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c1_32230V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c1_9560V3.1 No alias TOXICOS EN LEVADURA 2 0.03 Archaeplastida
Pp3c22_15440V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c23_10580V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c23_1651V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.03 Archaeplastida
Pp3c4_30240V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c5_4170V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Smo96681 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
Solyc01g100100.4.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc01g109200.4.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc02g068415.1.1 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc02g083400.3.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc03g005490.4.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Solyc03g114090.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc03g114190.1.1 No alias RING-H2 finger protein ATL56 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc04g074820.3.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc05g018760.3.1 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
Solyc08g008080.1.1 No alias E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis... 0.02 Archaeplastida
Solyc09g010650.1.1 No alias RING-H2 finger protein ATL33 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc09g066300.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc09g075320.1.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Solyc11g005300.2.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc11g010330.3.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc11g066510.3.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Solyc12g087840.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e002233_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e002272_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e002430_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e003126_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e003426_P001 No alias ubiquitin protein ligase (XERICO) 0.02 Archaeplastida
Zm00001e007122_P001 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Zm00001e007129_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e007956_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e010029_P001 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
Zm00001e010787_P001 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e013809_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e014286_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e015449_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e015477_P001 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Zm00001e015495_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e016474_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e017960_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e022175_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e032186_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e034907_P001 No alias RING-H2 finger protein ATL80 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Zm00001e035560_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e036691_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e041409_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0045927 positive regulation of growth IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 103 146
No external refs found!