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  5. LOC_Os03g42320.1

LOC_Os03g42320.1


Description : SEC1 family transport protein SLY1 OS=Oryza sativa subsp. japonica (sp|q851w1|sly1_orysj : 1125.0)


Gene families : OG0004879 (Archaeplastida) Phylogenetic Tree(s): OG0004879_tree ,
OG_05_0005751 (LandPlants) Phylogenetic Tree(s): OG_05_0005751_tree ,
OG_06_0007190 (SeedPlants) Phylogenetic Tree(s): OG_06_0007190_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g42320.1
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01023951001 No alias SEC1 family transport protein SLY1 OS=Arabidopsis thaliana 0.06 Archaeplastida
MA_5013g0010 No alias SEC1 family transport protein SLY1 OS=Arabidopsis... 0.04 Archaeplastida
Mp3g02060.1 No alias SEC1 family transport protein SLY1 OS=Arabidopsis... 0.03 Archaeplastida
Smo97797 No alias SEC1 family transport protein SLY1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc01g112150.3.1 No alias SEC1 family transport protein SLY1 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e002799_P001 No alias SEC1 family transport protein SLY1 OS=Oryza sativa... 0.11 Archaeplastida
Zm00001e023511_P002 No alias SEC1 family transport protein SLY1 OS=Oryza sativa... 0.12 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006904 vesicle docking involved in exocytosis IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019107 myristoyltransferase activity IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001619 Sec1-like 44 603
No external refs found!