LOC_Os03g54160.1

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0002159 (SeedPlants) Phylogenetic Tree(s): OG_06_0002159_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g54160.1
Cluster	HCCA: Cluster_276

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00001p00267050	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00047p00181740	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00047p00190220	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00066p00109320	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AT2G22630	AGL17	AGAMOUS-like 17	0.06	Archaeplastida
AT4G11880	AGL14	AGAMOUS-like 14	0.05	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT4G24540	AGL24	AGAMOUS-like 24	0.02	Archaeplastida
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.03	Archaeplastida
GSVIVT01008139001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01008140001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01008560001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01012249001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01012250001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01018450001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01035477001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Gb_03807	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Gb_05128	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os02g52340.1	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
MA_32676g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_502016g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.09	Archaeplastida
MA_5917g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_63212g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_6544g0010	No alias	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.05	Archaeplastida
MA_8748850g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Pp3c12_22890V3.1	No alias	AGAMOUS-like 66	0.01	Archaeplastida
Pp3c14_22180V3.1	No alias	AGAMOUS-like 104	0.01	Archaeplastida
Pp3c17_13070V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Pp3c8_6920V3.1	No alias	AGAMOUS-like 66	0.01	Archaeplastida
Smo121275	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Solyc01g106710.1.1	No alias	component MED19 of head module of MEDIATOR transcription...	0.02	Archaeplastida
Solyc02g089210.4.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc08g067230.4.1	No alias	No annotation	0.02	Archaeplastida
Solyc11g010570.2.1	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Zm00001e000846_P003	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e005705_P004	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e006950_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e010125_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e012026_P002	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Zm00001e015924_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e034629_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e036159_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e038716_P004	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e039774_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
MF	GO:0010333	terpene synthase activity	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	84	171

External Links

No external refs found!

LOC_Os03g54160.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation