Description : tRNA dihydrouridine synthase
Gene families : OG0005341 (Archaeplastida) Phylogenetic Tree(s): OG0005341_tree ,
OG_05_0007253 (LandPlants) Phylogenetic Tree(s): OG_05_0007253_tree ,
OG_06_0007266 (SeedPlants) Phylogenetic Tree(s): OG_06_0007266_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os04g20990.1 | |
Cluster | HCCA: Cluster_188 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00103p00116510 | evm_27.TU.AmTr_v1... | RNA processing.RNA modification.dihydrouridylation.tRNA... | 0.02 | Archaeplastida | |
Cre15.g636896 | No alias | RNA processing.RNA modification.dihydrouridylation.tRNA... | 0.02 | Archaeplastida | |
GSVIVT01032128001 | No alias | RNA processing.RNA modification.dihydrouridylation.tRNA... | 0.04 | Archaeplastida | |
Smo104800 | No alias | RNA processing.RNA modification.dihydrouridylation.tRNA... | 0.03 | Archaeplastida | |
Zm00001e008546_P006 | No alias | tRNA dihydrouridine synthase | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0008033 | tRNA processing | IEA | Interproscan |
MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEA | Interproscan |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEA | Interproscan |
BP | GO:0055114 | oxidation-reduction process | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0004177 | aminopeptidase activity | IEP | Neighborhood |
MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Neighborhood |
MF | GO:0004559 | alpha-mannosidase activity | IEP | Neighborhood |
MF | GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | IEP | Neighborhood |
MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Neighborhood |
BP | GO:0006508 | proteolysis | IEP | Neighborhood |
BP | GO:0006766 | vitamin metabolic process | IEP | Neighborhood |
BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Neighborhood |
BP | GO:0006771 | riboflavin metabolic process | IEP | Neighborhood |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
MF | GO:0008233 | peptidase activity | IEP | Neighborhood |
MF | GO:0008236 | serine-type peptidase activity | IEP | Neighborhood |
MF | GO:0008531 | riboflavin kinase activity | IEP | Neighborhood |
BP | GO:0009110 | vitamin biosynthetic process | IEP | Neighborhood |
BP | GO:0009231 | riboflavin biosynthetic process | IEP | Neighborhood |
MF | GO:0009975 | cyclase activity | IEP | Neighborhood |
MF | GO:0009976 | tocopherol cyclase activity | IEP | Neighborhood |
MF | GO:0015923 | mannosidase activity | IEP | Neighborhood |
MF | GO:0015924 | mannosyl-oligosaccharide mannosidase activity | IEP | Neighborhood |
CC | GO:0016020 | membrane | IEP | Neighborhood |
BP | GO:0016485 | protein processing | IEP | Neighborhood |
MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
MF | GO:0017171 | serine hydrolase activity | IEP | Neighborhood |
BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Neighborhood |
BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Neighborhood |
BP | GO:0043631 | RNA polyadenylation | IEP | Neighborhood |
MF | GO:0051499 | D-aminoacyl-tRNA deacylase activity | IEP | Neighborhood |
BP | GO:0051604 | protein maturation | IEP | Neighborhood |
MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Neighborhood |
MF | GO:0070566 | adenylyltransferase activity | IEP | Neighborhood |
BP | GO:0071586 | CAAX-box protein processing | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001269 | tRNA_hU_synthase | 67 | 378 |
No external refs found! |