LOC_Os04g48030.1

Description : transcription factor (HSF)

Gene families : OG0000090 (Archaeplastida) Phylogenetic Tree(s): OG0000090_tree ,
OG_05_0000053 (LandPlants) Phylogenetic Tree(s): OG_05_0000053_tree ,
OG_06_0000104 (SeedPlants) Phylogenetic Tree(s): OG_06_0000104_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g48030.1
Cluster	HCCA: Cluster_199

Target	Alias	Description	ECC score	Gene Family Method
AT1G32330	ATHSFA1D, HSFA1D	heat shock transcription factor A1D	0.03	Archaeplastida
AT2G26150	HSFA2, ATHSFA2	heat shock transcription factor A2	0.12	Archaeplastida
AT2G41690	AT-HSFB3, HSFB3	heat shock transcription factor B3	0.03	Archaeplastida
AT3G22830	AT-HSFA6B, HSFA6B	heat shock transcription factor A6B	0.02	Archaeplastida
AT3G24520	AT-HSFC1, HSFC1	heat shock transcription factor C1	0.06	Archaeplastida
AT3G51910	AT-HSFA7A, HSFA7A	heat shock transcription factor A7A	0.05	Archaeplastida
AT3G63350	HSFA7B, AT-HSFA7B	winged-helix DNA-binding transcription factor family protein	0.06	Archaeplastida
AT4G18870	No alias	E2F/DP family winged-helix DNA-binding domain	0.02	Archaeplastida
AT5G03720	HSFA3, AT-HSFA3	heat shock transcription factor A3	0.05	Archaeplastida
AT5G62020	AT-HSFB2A, HSFB2A	heat shock transcription factor B2A	0.03	Archaeplastida
GSVIVT01003118001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.07	Archaeplastida
GSVIVT01033781001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.08	Archaeplastida
GSVIVT01035385001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.04	Archaeplastida
Gb_11758	No alias	transcription factor (HSF). transcriptional regulator (HsfA1)	0.07	Archaeplastida
Gb_16343	No alias	transcription factor (HSF). transcriptional regulator (HsfA1)	0.04	Archaeplastida
Gb_19891	No alias	transcription factor (HSF)	0.06	Archaeplastida
Smo107503	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.07	Archaeplastida
Solyc08g080540.3.1	No alias	transcription factor (HSF)	0.07	Archaeplastida
Solyc09g065660.4.1	No alias	transcription factor (HSF)	0.03	Archaeplastida
Zm00001e000467_P001	No alias	transcription factor (HSF)	0.08	Archaeplastida
Zm00001e000890_P002	No alias	transcription factor (HSF)	0.03	Archaeplastida
Zm00001e003755_P002	No alias	transcription factor (HSF)	0.11	Archaeplastida
Zm00001e004752_P001	No alias	transcription factor (HSF)	0.15	Archaeplastida
Zm00001e014408_P001	No alias	transcription factor (HSF)	0.03	Archaeplastida
Zm00001e024268_P001	No alias	transcription factor (HSF)	0.11	Archaeplastida
Zm00001e027464_P001	No alias	transcription factor (HSF)	0.03	Archaeplastida
Zm00001e029052_P001	No alias	transcription factor (HSF)	0.03	Archaeplastida
Zm00001e034782_P002	No alias	transcription factor (HSF)	0.12	Archaeplastida
Zm00001e037165_P002	No alias	transcription factor (HSF)	0.13	Archaeplastida
Zm00001e037244_P001	No alias	transcription factor (HSF)	0.03	Archaeplastida
Zm00001e041441_P001	No alias	transcription factor (HSF)	0.13	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
CC	GO:0044217	other organism part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Neighborhood
MF	GO:0001671	ATPase activator activity	IEP	Neighborhood
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
CC	GO:0005681	spliceosomal complex	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
MF	GO:0008047	enzyme activator activity	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
MF	GO:0031072	heat shock protein binding	IEP	Neighborhood
CC	GO:0032993	protein-DNA complex	IEP	Neighborhood
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
BP	GO:0043933	protein-containing complex subunit organization	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044815	DNA packaging complex	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood
MF	GO:0051087	chaperone binding	IEP	Neighborhood
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Neighborhood
MF	GO:0060590	ATPase regulator activity	IEP	Neighborhood
BP	GO:0065003	protein-containing complex assembly	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000232	HSF_DNA-bd	11	100

External Links

No external refs found!

LOC_Os04g48030.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation