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  5. LOC_Os04g57670.1

LOC_Os04g57670.1


Description : Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana (sp|q9sct2|pp277_arath : 540.0)


Gene families : OG0010988 (Archaeplastida) Phylogenetic Tree(s): OG0010988_tree ,
OG_05_0010944 (LandPlants) Phylogenetic Tree(s): OG_05_0010944_tree ,
OG_06_0010904 (SeedPlants) Phylogenetic Tree(s): OG_06_0010904_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g57670.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
Solyc02g090240.4.1 No alias Pentatricopeptide repeat-containing protein At3g50420... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 160 183
IPR002885 Pentatricopeptide_repeat 188 217
IPR002885 Pentatricopeptide_repeat 567 588
IPR002885 Pentatricopeptide_repeat 396 424
IPR002885 Pentatricopeptide_repeat 262 284
IPR002885 Pentatricopeptide_repeat 493 541
No external refs found!