LOC_Os04g59624.2


Description : chromatin remodeling factor (ERCC6)


Gene families : OG0004952 (Archaeplastida) Phylogenetic Tree(s): OG0004952_tree ,
OG_05_0005405 (LandPlants) Phylogenetic Tree(s): OG_05_0005405_tree ,
OG_06_0005202 (SeedPlants) Phylogenetic Tree(s): OG_06_0005202_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g59624.2
Cluster HCCA: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
AT5G63950 CHR24 chromatin remodeling 24 0.04 Archaeplastida
Cpa|evm.model.tig00000441.21 No alias Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00001292.5 No alias Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre03.g183350 No alias Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01026450001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
Gb_17075 No alias chromatin remodeling factor (ERCC6) 0.05 Archaeplastida
MA_18372g0010 No alias Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana... 0.11 Archaeplastida
Mp1g29760.1 No alias chromatin remodeling factor (ERCC6) 0.03 Archaeplastida
Pp3c14_20620V3.1 No alias chromatin remodeling 24 0.07 Archaeplastida
Pp3c2_11030V3.1 No alias chromatin remodeling 24 0.08 Archaeplastida
Solyc01g068280.3.1 No alias chromatin remodeling factor (ERCC6) 0.11 Archaeplastida
Zm00001e007521_P001 No alias chromatin remodeling factor (ERCC6) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
CC GO:0000796 condensin complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006323 DNA packaging IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007076 mitotic chromosome condensation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010639 negative regulation of organelle organization IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0030261 chromosome condensation IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0042555 MCM complex IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043086 negative regulation of catalytic activity IEP Neighborhood
BP GO:0044092 negative regulation of molecular function IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0051095 regulation of helicase activity IEP Neighborhood
BP GO:0051097 negative regulation of helicase activity IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051129 negative regulation of cellular component organization IEP Neighborhood
BP GO:0051336 regulation of hydrolase activity IEP Neighborhood
BP GO:0051346 negative regulation of hydrolase activity IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:1905462 regulation of DNA duplex unwinding IEP Neighborhood
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Neighborhood
BP GO:1905774 regulation of DNA helicase activity IEP Neighborhood
BP GO:1905775 negative regulation of DNA helicase activity IEP Neighborhood
BP GO:2001251 negative regulation of chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR000330 SNF2_N 295 585
IPR001650 Helicase_C 639 751
No external refs found!