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  5. LOC_Os05g23960.1

LOC_Os05g23960.1


Description : Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana (sp|q9lfl5|pp390_arath : 917.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0012119 (LandPlants) Phylogenetic Tree(s): OG_05_0012119_tree ,
OG_06_0012977 (SeedPlants) Phylogenetic Tree(s): OG_06_0012977_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g23960.1
Cluster HCCA: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.02 Archaeplastida
AMTR_s00061p00127300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
AT3G16610 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Archaeplastida
GSVIVT01005577001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
LOC_Os02g09800.1 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
LOC_Os12g36620.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_153011g0010 No alias RNA editing factor (MEF1) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 291 330
IPR002885 Pentatricopeptide_repeat 545 592
IPR002885 Pentatricopeptide_repeat 439 489
IPR032867 DYW_dom 718 842
IPR002885 Pentatricopeptide_repeat 187 212
IPR002885 Pentatricopeptide_repeat 410 434
IPR002885 Pentatricopeptide_repeat 519 544
IPR002885 Pentatricopeptide_repeat 154 183
No external refs found!