LOC_Os05g50960.1

Description : Probable polygalacturonase OS=Vitis vinifera (sp|a7pzl3|pglr_vitvi : 367.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 72.6)

Gene families : OG0000349 (Archaeplastida) Phylogenetic Tree(s): OG0000349_tree ,
OG_05_0000329 (LandPlants) Phylogenetic Tree(s): OG_05_0000329_tree ,
OG_06_0005547 (SeedPlants) Phylogenetic Tree(s): OG_06_0005547_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g50960.1
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00258260	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.04	Archaeplastida
AMTR_s00003p00141260	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.02	Archaeplastida
AMTR_s00045p00118570	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.02	Archaeplastida
AMTR_s00107p00122980	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.02	Archaeplastida
AT1G19170	No alias	Pectin lyase-like superfamily protein	0.09	Archaeplastida
AT2G23900	No alias	Pectin lyase-like superfamily protein	0.06	Archaeplastida
AT3G06770	No alias	Pectin lyase-like superfamily protein	0.08	Archaeplastida
AT3G16850	No alias	Pectin lyase-like superfamily protein	0.06	Archaeplastida
AT3G42950	No alias	Pectin lyase-like superfamily protein	0.01	Archaeplastida
AT3G48950	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
AT4G23500	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
AT4G23820	No alias	Pectin lyase-like superfamily protein	0.07	Archaeplastida
AT5G41870	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
GSVIVT01019405001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.04	Archaeplastida
GSVIVT01019516001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.03	Archaeplastida
GSVIVT01026985001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.05	Archaeplastida
GSVIVT01028860001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.03	Archaeplastida
Gb_39001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
MA_10430135g0020	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.05	Archaeplastida
MA_88519g0010	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.06	Archaeplastida
MA_98717g0010	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	Archaeplastida
Mp7g13870.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
Pp3c19_14240V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c6_7160V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Solyc01g094970.4.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
Solyc05g049980.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.06	Archaeplastida
Solyc06g009790.4.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	Archaeplastida
Solyc07g042160.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
Solyc08g081480.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.05	Archaeplastida
Solyc08g082170.4.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Solyc09g075460.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.06	Archaeplastida
Zm00001e006249_P001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.07	Archaeplastida
Zm00001e023760_P001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	Archaeplastida
Zm00001e024829_P001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Zm00001e026646_P002	No alias	no hits & (original description: none)	0.12	Archaeplastida
Zm00001e039674_P002	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004367	glycerol-3-phosphate dehydrogenase [NAD+] activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006072	glycerol-3-phosphate metabolic process	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
MF	GO:0017048	Rho GTPase binding	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
MF	GO:0019104	DNA N-glycosylase activity	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0044283	small molecule biosynthetic process	IEP	Neighborhood
BP	GO:0046168	glycerol-3-phosphate catabolic process	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
MF	GO:0051087	chaperone binding	IEP	Neighborhood
BP	GO:0052646	alditol phosphate metabolic process	IEP	Neighborhood
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	145	423

External Links

No external refs found!

LOC_Os05g50960.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation