1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os06g04600.1

LOC_Os06g04600.1


Description : pre-60S ribosomal subunit assembly factor (RPF1)


Gene families : OG0005658 (Archaeplastida) Phylogenetic Tree(s): OG0005658_tree ,
OG_05_0006541 (LandPlants) Phylogenetic Tree(s): OG_05_0006541_tree ,
OG_06_0006711 (SeedPlants) Phylogenetic Tree(s): OG_06_0006711_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g04600.1
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000405.29 No alias No description available 0.02 Archaeplastida
Cre04.g218850 No alias No description available 0.03 Archaeplastida
GSVIVT01023391001 No alias No description available 0.02 Archaeplastida
MA_10436733g0010 No alias pre-60S ribosomal subunit assembly factor (RPF1) 0.03 Archaeplastida
Mp4g09960.1 No alias pre-60S ribosomal subunit assembly factor (RPF1) 0.03 Archaeplastida
Pp3c1_10040V3.1 No alias Ribosomal RNA processing Brix domain protein 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008199 ferric iron binding IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007109 Brix 148 328
No external refs found!