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  5. LOC_Os06g04640.1

LOC_Os06g04640.1


Description : transcriptional co-activator (BET/GTE)


Gene families : OG0000250 (Archaeplastida) Phylogenetic Tree(s): OG0000250_tree ,
OG_05_0003220 (LandPlants) Phylogenetic Tree(s): OG_05_0003220_tree ,
OG_06_0004775 (SeedPlants) Phylogenetic Tree(s): OG_06_0004775_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g04640.1
Cluster HCCA: Cluster_296

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000632.12 No alias No description available 0.02 Archaeplastida
Cre08.g367300 No alias Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana 0.02 Archaeplastida
LOC_Os02g15220.2 No alias transcriptional co-activator (BET/GTE) 0.03 Archaeplastida
Pp3c18_15420V3.1 No alias Transcription factor GTE6 0.02 Archaeplastida
Pp3c21_9250V3.1 No alias Transcription factor GTE6 0.03 Archaeplastida
Solyc09g090370.3.1 No alias transcriptional co-activator (BET/GTE) 0.03 Archaeplastida
Zm00001e009037_P001 No alias transcriptional co-activator (BET/GTE) 0.02 Archaeplastida
Zm00001e021805_P005 No alias transcriptional co-activator (BET/GTE) 0.04 Archaeplastida
Zm00001e024513_P001 No alias transcriptional co-activator (BET/GTE) 0.02 Archaeplastida
Zm00001e029260_P001 No alias transcriptional co-activator (BET/GTE) 0.03 Archaeplastida
Zm00001e029954_P002 No alias transcriptional co-activator (BET/GTE) 0.04 Archaeplastida
Zm00001e041678_P002 No alias transcriptional co-activator (BET/GTE) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006906 vesicle fusion IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016050 vesicle organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
CC GO:0030289 protein phosphatase 4 complex IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0061025 membrane fusion IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
BP GO:0090174 organelle membrane fusion IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR027353 NET_dom 257 319
IPR001487 Bromodomain 98 183
No external refs found!