LOC_Os06g45820.1

Description : component FtsH1|2|5|6|8 of FtsH plastidial protease complexes

Gene families : OG0000346 (Archaeplastida) Phylogenetic Tree(s): OG0000346_tree ,
OG_05_0002814 (LandPlants) Phylogenetic Tree(s): OG_05_0002814_tree ,
OG_06_0003173 (SeedPlants) Phylogenetic Tree(s): OG_06_0003173_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g45820.1
Cluster	HCCA: Cluster_324

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00232760	evm_27.TU.AmTr_v1...	Protein degradation.peptidase families.metallopeptidase...	0.04	Archaeplastida
AMTR_s00056p00047160	evm_27.TU.AmTr_v1...	Probable inactive ATP-dependent zinc metalloprotease...	0.03	Archaeplastida
AMTR_s00106p00108310	evm_27.TU.AmTr_v1...	Protein degradation.peptidase families.metallopeptidase...	0.05	Archaeplastida
AT1G50250	FTSH1	FTSH protease 1	0.12	Archaeplastida
AT5G42270	FTSH5, VAR1	FtsH extracellular protease family	0.07	Archaeplastida
Cpa\|evm.model.tig00000704.23	No alias	ATP-dependent zinc metalloprotease FTSH 1, chloroplastic...	0.06	Archaeplastida
Cre09.g393950	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.05	Archaeplastida
Cre12.g485800	No alias	Protein degradation.peptidase families.metallopeptidase...	0.04	Archaeplastida
Cre17.g720050	No alias	Protein degradation.peptidase families.metallopeptidase...	0.06	Archaeplastida
GSVIVT01008686001	No alias	ATP-dependent zinc metalloprotease FTSH 1, chloroplastic...	0.09	Archaeplastida
GSVIVT01020760001	No alias	Protein degradation.peptidase families.metallopeptidase...	0.1	Archaeplastida
Gb_06887	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.05	Archaeplastida
Gb_12830	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.1	Archaeplastida
Gb_32360	No alias	component FtsHi of protein translocation ATPase motor complex	0.02	Archaeplastida
MA_188257g0010	No alias	no hits & (original description: none)	0.11	Archaeplastida
MA_98203g0010	No alias	No annotation	0.14	Archaeplastida
Mp3g08790.1	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.03	Archaeplastida
Mp4g19200.1	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.05	Archaeplastida
Pp3c12_22830V3.1	No alias	FtsH extracellular protease family	0.1	Archaeplastida
Pp3c20_15780V3.1	No alias	FtsH extracellular protease family	0.06	Archaeplastida
Pp3c20_5760V3.1	No alias	FtsH extracellular protease family	0.04	Archaeplastida
Pp3c22_8480V3.1	No alias	FtsH extracellular protease family	0.02	Archaeplastida
Pp3c23_14665V3.1	No alias	FtsH extracellular protease family	0.08	Archaeplastida
Pp3c23_8400V3.1	No alias	FtsH extracellular protease family	0.1	Archaeplastida
Smo139726	No alias	Protein degradation.peptidase families.metallopeptidase...	0.03	Archaeplastida
Smo149856	No alias	Protein degradation.peptidase families.metallopeptidase...	0.03	Archaeplastida
Smo152929	No alias	Protein degradation.peptidase families.metallopeptidase...	0.02	Archaeplastida
Solyc04g082250.3.1	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.09	Archaeplastida
Solyc07g055320.4.1	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.09	Archaeplastida
Zm00001e030153_P001	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.09	Archaeplastida
Zm00001e030358_P003	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.17	Archaeplastida
Zm00001e037753_P001	No alias	component FtsH1\|2\|5\|6\|8 of FtsH plastidial protease complexes	0.17	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004222	metalloendopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003839	gamma-glutamylcyclotransferase activity	IEP	Neighborhood
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Neighborhood
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0006536	glutamate metabolic process	IEP	Neighborhood
BP	GO:0006537	glutamate biosynthetic process	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006749	glutathione metabolic process	IEP	Neighborhood
BP	GO:0006751	glutathione catabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006813	potassium ion transport	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
MF	GO:0008565	protein transporter activity	IEP	Neighborhood
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Neighborhood
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Neighborhood
MF	GO:0015298	solute:cation antiporter activity	IEP	Neighborhood
MF	GO:0015299	solute:proton antiporter activity	IEP	Neighborhood
MF	GO:0015930	glutamate synthase activity	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Neighborhood
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016842	amidine-lyase activity	IEP	Neighborhood
MF	GO:0016854	racemase and epimerase activity	IEP	Neighborhood
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
CC	GO:0019898	extrinsic component of membrane	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0032977	membrane insertase activity	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
MF	GO:0033743	peptide-methionine (R)-S-oxide reductase activity	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Neighborhood
BP	GO:0043171	peptide catabolic process	IEP	Neighborhood
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0044273	sulfur compound catabolic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051187	cofactor catabolic process	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
MF	GO:0071949	FAD binding	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	250	381
IPR000642	Peptidase_M41	464	653

External Links

No external refs found!

LOC_Os06g45820.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation