LOC_Os07g24090.1

Description : transcription factor (mTERF)

Gene families : OG0000097 (Archaeplastida) Phylogenetic Tree(s): OG0000097_tree ,
OG_05_0000048 (LandPlants) Phylogenetic Tree(s): OG_05_0000048_tree ,
OG_06_0000021 (SeedPlants) Phylogenetic Tree(s): OG_06_0000021_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g24090.1
Cluster	HCCA: Cluster_254

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00116710	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00010p00117910	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.06	Archaeplastida
AMTR_s00010p00230750	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00060p00059830	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.05	Archaeplastida
AMTR_s00126p00036100	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
GSVIVT01022213001	No alias	RNA biosynthesis.organelle...	0.02	Archaeplastida
GSVIVT01036787001	No alias	RNA biosynthesis.organelle...	0.02	Archaeplastida
Gb_06120	No alias	TAC15 cofactor of plastid-encoded RNA polymerase....	0.02	Archaeplastida
Gb_07257	No alias	TAC15 cofactor of plastid-encoded RNA polymerase....	0.04	Archaeplastida
Gb_12368	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Gb_15878	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Gb_26176	No alias	transcription factor (mTERF)	0.04	Archaeplastida
MA_192398g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_28540g0010	No alias	transcription factor (mTERF)	0.01	Archaeplastida
MA_31885g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
MA_493420g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_57842g0010	No alias	transcription factor (mTERF)	0.01	Archaeplastida
MA_714651g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_7539255g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_804585g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_81581g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_92135g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Solyc02g082010.3.1	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Solyc04g011700.2.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Solyc04g072500.1.1	No alias	transcription factor (mTERF)	0.01	Archaeplastida
Zm00001e013884_P001	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Zm00001e018894_P001	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Zm00001e022322_P001	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Zm00001e027097_P001	No alias	transcription factor (mTERF)	0.04	Archaeplastida
Zm00001e031638_P001	No alias	transcription factor (mTERF)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	IEP	Neighborhood
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Neighborhood
MF	GO:0003684	damaged DNA binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006289	nucleotide-excision repair	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006401	RNA catabolic process	IEP	Neighborhood
BP	GO:0006402	mRNA catabolic process	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
MF	GO:0008047	enzyme activator activity	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0010498	proteasomal protein catabolic process	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
CC	GO:0030118	clathrin coat	IEP	Neighborhood
CC	GO:0030120	vesicle coat	IEP	Neighborhood
CC	GO:0030125	clathrin vesicle coat	IEP	Neighborhood
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Neighborhood
CC	GO:0030132	clathrin coat of coated pit	IEP	Neighborhood
BP	GO:0030163	protein catabolic process	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0043085	positive regulation of catalytic activity	IEP	Neighborhood
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0043933	protein-containing complex subunit organization	IEP	Neighborhood
BP	GO:0044093	positive regulation of molecular function	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0050790	regulation of catalytic activity	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0065003	protein-containing complex assembly	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
BP	GO:0065009	regulation of molecular function	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003690	MTERF	68	176
IPR003690	MTERF	211	377

External Links

No external refs found!

LOC_Os07g24090.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation