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  5. LOC_Os07g40750.1

LOC_Os07g40750.1


Description : Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana (sp|q84jr3|pp334_arath : 407.0)


Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0000298 (LandPlants) Phylogenetic Tree(s): OG_05_0000298_tree ,
OG_06_0003159 (SeedPlants) Phylogenetic Tree(s): OG_06_0003159_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g40750.1
Cluster HCCA: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00095p00027730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80270,... 0.02 Archaeplastida
AMTR_s00135p00094440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g09450,... 0.02 Archaeplastida
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.03 Archaeplastida
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT4G21705 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.03 Archaeplastida
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.05 Archaeplastida
GSVIVT01024495001 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.05 Archaeplastida
GSVIVT01024964001 No alias Pentatricopeptide repeat-containing protein At1g07590,... 0.02 Archaeplastida
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.06 Archaeplastida
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.06 Archaeplastida
GSVIVT01035156001 No alias Pentatricopeptide repeat-containing protein At5g09450,... 0.03 Archaeplastida
Gb_03507 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.02 Archaeplastida
Gb_09452 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
Gb_14211 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
Gb_20238 No alias RNA editing factor (POCO) 0.02 Archaeplastida
Gb_38114 No alias RNA editing factor (POCO) 0.02 Archaeplastida
LOC_Os02g55310.1 No alias Pentatricopeptide repeat-containing protein At5g27460... 0.02 Archaeplastida
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida
MA_10431989g0010 No alias RNA editing factor (POCO) 0.03 Archaeplastida
MA_29806g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
MA_492314g0010 No alias RNA editing factor (POCO) 0.03 Archaeplastida
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
MA_77400g0010 No alias Pentatricopeptide repeat-containing protein At1g15480,... 0.03 Archaeplastida
Pp3c18_8600V3.1 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Archaeplastida
Smo402234 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.03 Archaeplastida
Smo406783 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.02 Archaeplastida
Smo416459 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.02 Archaeplastida
Solyc01g079320.4.1 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.05 Archaeplastida
Solyc01g100580.3.1 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.03 Archaeplastida
Solyc02g078330.3.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 Archaeplastida
Solyc06g005140.3.1 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.02 Archaeplastida
Solyc07g054090.3.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.05 Archaeplastida
Solyc07g063220.4.1 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.02 Archaeplastida
Solyc11g006380.2.1 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
Solyc12g020050.2.1 No alias RNA editing factor (POCO) 0.03 Archaeplastida
Zm00001e007959_P001 No alias Pentatricopeptide repeat-containing protein At5g09450,... 0.03 Archaeplastida
Zm00001e012594_P001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.04 Archaeplastida
Zm00001e026211_P002 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.04 Archaeplastida
Zm00001e039746_P002 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000077 DNA damage checkpoint IEP Neighborhood
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
CC GO:0000781 chromosome, telomeric region IEP Neighborhood
CC GO:0000784 nuclear chromosome, telomeric region IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
CC GO:0030896 checkpoint clamp complex IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 344 371
IPR002885 Pentatricopeptide_repeat 168 196
IPR002885 Pentatricopeptide_repeat 380 406
IPR002885 Pentatricopeptide_repeat 203 245
No external refs found!