- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : component TRA1 of SAGA transcription co-activator complex
Gene families : OG0001726 (Archaeplastida) Phylogenetic Tree(s): OG0001726_tree ,
OG_05_0002263 (LandPlants) Phylogenetic Tree(s): OG_05_0002263_tree ,
OG_06_0001755 (SeedPlants) Phylogenetic Tree(s): OG_06_0001755_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os07g45070.1 | |
| Cluster | HCCA: Cluster_40 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00268p00010890 | evm_27.TU.AmTr_v1... | RNA biosynthesis.RNA polymerase II-dependent... | 0.05 | Archaeplastida | |
| AMTR_s00268p00016240 | evm_27.TU.AmTr_v1... | Protein modification.phosphorylation.atypical kinase... | 0.11 | Archaeplastida | |
| AMTR_s03799p00000720 | evm_27.TU.AmTr_v1... | No description available | 0.07 | Archaeplastida | |
| AT2G17930 | No alias | Phosphatidylinositol 3- and 4-kinase family protein with... | 0.15 | Archaeplastida | |
| AT4G36080 | No alias | phosphotransferases, alcohol group as... | 0.13 | Archaeplastida | |
| Cpa|evm.model.tig00021537.67 | No alias | No description available | 0.02 | Archaeplastida | |
| Cpa|evm.model.tig00021537.68 | No alias | No description available | 0.03 | Archaeplastida | |
| Cre02.g088750 | No alias | Protein modification.phosphorylation.atypical kinase... | 0.06 | Archaeplastida | |
| GSVIVT01018783001 | No alias | Protein modification.phosphorylation.atypical kinase... | 0.15 | Archaeplastida | |
| Gb_02840 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| MA_100706g0010 | No alias | no hits & (original description: none) | 0.09 | Archaeplastida | |
| MA_10427352g0010 | No alias | component TRA1 of SAGA transcription co-activator complex | 0.15 | Archaeplastida | |
| MA_10427352g0020 | No alias | no hits & (original description: none) | 0.11 | Archaeplastida | |
| MA_10430300g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| MA_10430300g0020 | No alias | component TRA1 of SAGA transcription co-activator complex | 0.04 | Archaeplastida | |
| MA_10432279g0010 | No alias | no hits & (original description: none) | 0.07 | Archaeplastida | |
| MA_18290g0030 | No alias | component TRA1 of SAGA transcription co-activator complex | 0.02 | Archaeplastida | |
| MA_32897g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| MA_3337g0010 | No alias | protein kinase (PIKK) | 0.06 | Archaeplastida | |
| MA_6260g0010 | No alias | component TRA1 of SAGA transcription co-activator complex | 0.03 | Archaeplastida | |
| Mp5g23620.1 | No alias | component TRA1 of SAGA transcription co-activator... | 0.04 | Archaeplastida | |
| Pp3c17_20000V3.1 | No alias | Phosphatidylinositol 3- and 4-kinase family protein with... | 0.1 | Archaeplastida | |
| Smo98463 | No alias | Protein modification.phosphorylation.atypical kinase... | 0.02 | Archaeplastida | |
| Solyc02g083780.3.1 | No alias | protein kinase (PIKK) | 0.06 | Archaeplastida | |
| Solyc02g083900.3.1 | No alias | component TRA1 of SAGA transcription co-activator... | 0.05 | Archaeplastida | |
| Zm00001e035713_P005 | No alias | component TRA1 of SAGA transcription co-activator... | 0.17 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Neighborhood |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Neighborhood |
| MF | GO:0003712 | transcription coregulator activity | IEP | Neighborhood |
| MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Neighborhood |
| MF | GO:0003909 | DNA ligase activity | IEP | Neighborhood |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Neighborhood |
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Neighborhood |
| MF | GO:0004843 | thiol-dependent ubiquitin-specific protease activity | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
| BP | GO:0006260 | DNA replication | IEP | Neighborhood |
| BP | GO:0006310 | DNA recombination | IEP | Neighborhood |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Neighborhood |
| BP | GO:0006401 | RNA catabolic process | IEP | Neighborhood |
| BP | GO:0006402 | mRNA catabolic process | IEP | Neighborhood |
| BP | GO:0006479 | protein methylation | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0008213 | protein alkylation | IEP | Neighborhood |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0008276 | protein methyltransferase activity | IEP | Neighborhood |
| BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| BP | GO:0016571 | histone methylation | IEP | Neighborhood |
| BP | GO:0016579 | protein deubiquitination | IEP | Neighborhood |
| CC | GO:0016592 | mediator complex | IEP | Neighborhood |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Neighborhood |
| MF | GO:0017069 | snRNA binding | IEP | Neighborhood |
| MF | GO:0017070 | U6 snRNA binding | IEP | Neighborhood |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Neighborhood |
| MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Neighborhood |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Neighborhood |
| MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Neighborhood |
| MF | GO:0030623 | U5 snRNA binding | IEP | Neighborhood |
| BP | GO:0032259 | methylation | IEP | Neighborhood |
| MF | GO:0034061 | DNA polymerase activity | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034968 | histone lysine methylation | IEP | Neighborhood |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity | IEP | Neighborhood |
| MF | GO:0042054 | histone methyltransferase activity | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| CC | GO:0044451 | nucleoplasm part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Neighborhood |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0101005 | ubiquitinyl hydrolase activity | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |