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  5. LOC_Os08g01070.2

LOC_Os08g01070.2


Description : no hits & (original description: none)


Gene families : OG0001047 (Archaeplastida) Phylogenetic Tree(s): OG0001047_tree ,
OG_05_0001290 (LandPlants) Phylogenetic Tree(s): OG_05_0001290_tree ,
OG_06_0009446 (SeedPlants) Phylogenetic Tree(s): OG_06_0009446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g01070.2
Cluster HCCA: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00180690 evm_27.TU.AmTr_v1... Splicing factor-like protein 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT3G32940 No alias RNA-binding KH domain-containing protein 0.03 Archaeplastida
AT5G51300 No alias splicing factor-related 0.03 Archaeplastida
Cpa|evm.model.tig00001154.10 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Cre09.g386731 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Gb_09287 No alias pre-mRNA splicing factor (SF1) 0.05 Archaeplastida
Gb_19921 No alias pre-mRNA splicing factor (SF1) 0.06 Archaeplastida
Gb_23987 No alias pre-mRNA splicing factor (SF1) 0.05 Archaeplastida
MA_15045g0010 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
MA_160895g0010 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
MA_57875g0010 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
MA_8555g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
Mp7g15050.1 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
Pp3c11_24710V3.1 No alias splicing factor-related 0.02 Archaeplastida
Pp3c7_10890V3.1 No alias splicing factor-related 0.05 Archaeplastida
Solyc01g006010.3.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e008383_P001 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
Zm00001e040741_P001 No alias pre-mRNA splicing factor (SF1) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR032570 SF1-HH 62 164
No external refs found!