LOC_Os08g28820.1

Description : target protein binding component SKP1/ASK1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes

Gene families : OG0000418 (Archaeplastida) Phylogenetic Tree(s): OG0000418_tree ,
OG_05_0000338 (LandPlants) Phylogenetic Tree(s): OG_05_0000338_tree ,
OG_06_0015911 (SeedPlants) Phylogenetic Tree(s): OG_06_0015911_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g28820.1
Cluster	HCCA: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
AT3G21830	SK8, ASK8	SKP1-like 8	0.04	Archaeplastida
AT3G21860	ASK10, SK10	SKP1-like 10	0.04	Archaeplastida
AT4G34470	SK12, ASK12	SKP1-like 12	0.11	Archaeplastida
Gb_41410	No alias	target protein binding component SKP1/ASK1 of...	0.02	Archaeplastida
MA_121410g0010	No alias	target protein binding component SKP1/ASK1 of...	0.04	Archaeplastida
MA_99195g0010	No alias	target protein binding component SKP1/ASK1 of...	0.03	Archaeplastida
Smo98727	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
Solyc10g055580.2.1	No alias	target protein binding component SKP1/ASK1 of...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003993	acid phosphatase activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
BP	GO:0009116	nucleoside metabolic process	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016843	amine-lyase activity	IEP	Neighborhood
MF	GO:0016844	strictosidine synthase activity	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Neighborhood
MF	GO:0050662	coenzyme binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:1901657	glycosyl compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR016073	Skp1_comp_POZ	10	69
IPR016072	Skp1_comp_dimer	119	166

External Links

No external refs found!