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  5. LOC_Os08g40930.1

LOC_Os08g40930.1


Description : starch debranching enzyme. starch-debranching isoamylase-type enzyme


Gene families : OG0001068 (Archaeplastida) Phylogenetic Tree(s): OG0001068_tree ,
OG_05_0002327 (LandPlants) Phylogenetic Tree(s): OG_05_0002327_tree ,
OG_06_0002831 (SeedPlants) Phylogenetic Tree(s): OG_06_0002831_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g40930.1
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT1G03310 DBE1, ATISA2, BE2, ISA2 debranching enzyme 1 0.02 Archaeplastida
AT4G09020 ATISA3, ISA3 isoamylase 3 0.03 Archaeplastida
Cre03.g155001 No alias Carbohydrate metabolism.starch... 0.02 Archaeplastida
Cre03.g207713 No alias Carbohydrate metabolism.starch... 0.01 Archaeplastida
MA_10431226g0020 No alias starch debranching enzyme. starch-debranching... 0.03 Archaeplastida
Pp3c8_12820V3.1 No alias debranching enzyme 1 0.02 Archaeplastida
Solyc07g014590.4.1 No alias starch debranching enzyme. starch-debranching... 0.03 Archaeplastida
Solyc09g064800.3.1 No alias starch debranching enzyme. starch-debranching... 0.03 Archaeplastida
Zm00001e021910_P001 No alias starch debranching enzyme. starch-debranching... 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 267 368
IPR004193 Glyco_hydro_13_N 103 197
No external refs found!