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  5. LOC_Os09g07300.1

LOC_Os09g07300.1


Description : BIG auxin transport regulator protein


Gene families : OG0001460 (Archaeplastida) Phylogenetic Tree(s): OG0001460_tree ,
OG_05_0004241 (LandPlants) Phylogenetic Tree(s): OG_05_0004241_tree ,
OG_06_0005517 (SeedPlants) Phylogenetic Tree(s): OG_06_0005517_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g07300.1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00248360 evm_27.TU.AmTr_v1... Phytohormones.auxin.transport.polar auxin transport.BIG... 0.07 Archaeplastida
AMTR_s00090p00114080 evm_27.TU.AmTr_v1... Phytohormones.auxin.transport.polar auxin transport.BIG... 0.08 Archaeplastida
AT3G02260 DOC1, ASA1,... auxin transport protein (BIG) 0.14 Archaeplastida
Cpa|evm.model.tig00000158.22 No alias Auxin transport protein BIG OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01036538001 No alias Phytohormones.auxin.transport.polar auxin transport.BIG... 0.08 Archaeplastida
Gb_03145 No alias BIG auxin transport regulator protein 0.04 Archaeplastida
MA_10425891g0010 No alias BIG auxin transport regulator protein 0.14 Archaeplastida
MA_10436857g0010 No alias Auxin transport protein BIG OS=Arabidopsis thaliana... 0.14 Archaeplastida
MA_10437010g0010 No alias No annotation 0.1 Archaeplastida
MA_10437010g0030 No alias Auxin transport protein BIG OS=Oryza sativa subsp.... 0.09 Archaeplastida
MA_141071g0010 No alias Auxin transport protein BIG OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_14729g0010 No alias no hits & (original description: none) 0.1 Archaeplastida
MA_18467g0010 No alias Auxin transport protein BIG OS=Oryza sativa subsp.... 0.09 Archaeplastida
MA_92502g0010 No alias Rac-like GTP-binding protein 7 OS=Oryza sativa subsp.... 0.08 Archaeplastida
Mp2g04600.1 No alias BIG auxin transport regulator protein 0.05 Archaeplastida
Pp3c11_22340V3.1 No alias auxin transport protein (BIG) 0.05 Archaeplastida
Pp3c7_7030V3.1 No alias auxin transport protein (BIG) 0.03 Archaeplastida
Smo141341 No alias Phytohormones.auxin.transport.polar auxin transport.BIG... 0.03 Archaeplastida
Smo444506 No alias Phytohormones.auxin.transport.polar auxin transport.BIG... 0.02 Archaeplastida
Solyc02g089260.4.1 No alias BIG auxin transport regulator protein 0.12 Archaeplastida
Zm00001e033628_P002 No alias BIG auxin transport regulator protein 0.14 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR025704 E3_Ub_ligase_UBR4 4175 4322
IPR000433 Znf_ZZ 2606 2638
No external refs found!