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  5. LOC_Os09g07500.1

LOC_Os09g07500.1


Description : protein factor PRPF3 of U4/U6 small nuclear ribonucleoprotein particle (snRNP). protein factors (PRPF3) of U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0005546 (Archaeplastida) Phylogenetic Tree(s): OG0005546_tree ,
OG_05_0005789 (LandPlants) Phylogenetic Tree(s): OG_05_0005789_tree ,
OG_06_0007197 (SeedPlants) Phylogenetic Tree(s): OG_06_0007197_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g07500.1
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020816.63 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Pp3c14_26820V3.1 No alias Pre-mRNA-splicing factor 3 0.04 Archaeplastida
Solyc05g054880.3.1 No alias protein factor PRPF3 of U4/U6 small nuclear... 0.02 Archaeplastida
Solyc06g036580.4.1 No alias protein factor PRPF3 of U4/U6 small nuclear... 0.03 Archaeplastida
Zm00001e014268_P001 No alias protein factor PRPF3 of U4/U6 small nuclear... 0.12 Archaeplastida
Zm00001e024816_P001 No alias protein factor PRPF3 of U4/U6 small nuclear... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR010541 DUF1115 478 601
IPR013881 Pre-mRNA_splic_Prp3 231 453
No external refs found!