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  5. LOC_Os09g10230.1

LOC_Os09g10230.1


Description : target protein binding component SKP1/ASK1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes


Gene families : OG0000418 (Archaeplastida) Phylogenetic Tree(s): OG0000418_tree ,
OG_05_0000338 (LandPlants) Phylogenetic Tree(s): OG_05_0000338_tree ,
OG_06_0015911 (SeedPlants) Phylogenetic Tree(s): OG_06_0015911_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g10230.1
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01021776001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
MA_121410g0010 No alias target protein binding component SKP1/ASK1 of... 0.03 Archaeplastida
Zm00001e011288_P001 No alias target protein binding component SKP1/ASK1 of... 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
InterPro domains Description Start Stop
IPR016072 Skp1_comp_dimer 119 164
IPR016073 Skp1_comp_POZ 16 75
No external refs found!