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  5. LOC_Os09g13610.1

LOC_Os09g13610.1


Description : component MED25 of MEDIATOR transcription co-activator complex


Gene families : OG0004928 (Archaeplastida) Phylogenetic Tree(s): OG0004928_tree ,
OG_05_0004020 (LandPlants) Phylogenetic Tree(s): OG_05_0004020_tree ,
OG_06_0004964 (SeedPlants) Phylogenetic Tree(s): OG_06_0004964_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g13610.1
Cluster HCCA: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
MA_7252331g0010 No alias component MED25 of MEDIATOR transcription co-activator complex 0.02 Archaeplastida
Pp3c25_2660V3.1 No alias phytochrome and flowering time regulatory protein (PFT1) 0.02 Archaeplastida
Solyc05g009710.4.1 No alias component MED25 of MEDIATOR transcription co-activator complex 0.03 Archaeplastida
Zm00001e009666_P002 No alias component MED25 of MEDIATOR transcription co-activator complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004376 glycolipid mannosyltransferase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
MF GO:0008193 tRNA guanylyltransferase activity IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0010921 regulation of phosphatase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019902 phosphatase binding IEP Neighborhood
MF GO:0019903 protein phosphatase binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0035303 regulation of dephosphorylation IEP Neighborhood
BP GO:0035304 regulation of protein dephosphorylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
CC GO:0035658 Mon1-Ccz1 complex IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051336 regulation of hydrolase activity IEP Neighborhood
MF GO:0051751 alpha-1,4-mannosyltransferase activity IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
CC GO:0070531 BRCA1-A complex IEP Neighborhood
CC GO:0070552 BRISC complex IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR021419 Mediator_Med25_VWA 6 230
No external refs found!