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  5. LOC_Os09g13890.1

LOC_Os09g13890.1


Description : Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana (sp|q9c9t2|sard1_arath : 224.0)


Gene families : OG0000559 (Archaeplastida) Phylogenetic Tree(s): OG0000559_tree ,
OG_05_0081010 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0069883 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g13890.1
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AT1G73805 No alias Calmodulin binding protein-like 0.03 Archaeplastida
AT5G26920 CBP60G Cam-binding protein 60-like G 0.04 Archaeplastida
GSVIVT01003722001 No alias Calmodulin-binding protein 60 E OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01008322001 No alias Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01008323001 No alias Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01008324001 No alias Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana 0.06 Archaeplastida
LOC_Os12g36940.1 No alias Calmodulin-binding protein 60 D OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_18754g0010 No alias Calmodulin-binding protein 60 D OS=Arabidopsis thaliana... 0.02 Archaeplastida
Smo166784 No alias Calmodulin-binding protein 60 B OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc03g113980.3.1 No alias Calmodulin-binding protein 60 A OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc03g119250.4.1 No alias Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc12g036390.2.1 No alias Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e001388_P002 No alias Calmodulin-binding protein 60 D OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e016998_P001 No alias Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e038367_P001 No alias Calmodulin-binding protein 60 D OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e039693_P002 No alias Calmodulin-binding protein 60 B OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR012416 CBP60 98 338
No external refs found!