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  5. LOC_Os09g26810.1

LOC_Os09g26810.1


Description : component LHCa6 of LHC-I complex


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0001318 (LandPlants) Phylogenetic Tree(s): OG_05_0001318_tree ,
OG_06_0004198 (SeedPlants) Phylogenetic Tree(s): OG_06_0004198_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g26810.1
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00251360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
AMTR_s00009p00268360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.08 Archaeplastida
AMTR_s00010p00264770 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.08 Archaeplastida
AMTR_s00013p00180670 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.07 Archaeplastida
AMTR_s00029p00239610 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.1 Archaeplastida
AMTR_s00045p00069220 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00045p00069900 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.07 Archaeplastida
AMTR_s00061p00059490 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.08 Archaeplastida
AMTR_s00088p00153020 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.07 Archaeplastida
AMTR_s00099p00139960 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.07 Archaeplastida
AMTR_s00131p00114510 evm_27.TU.AmTr_v1... Photosystem I chlorophyll a/b-binding protein 6,... 0.07 Archaeplastida
AMTR_s00153p00078810 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
AMTR_s00175p00040360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.08 Archaeplastida
AMTR_s00189p00032350 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
AT1G19150 LHCA2*1, LHCA6 photosystem I light harvesting complex gene 6 0.1 Archaeplastida
AT1G45474 LHCA5 photosystem I light harvesting complex gene 5 0.06 Archaeplastida
Cre01.g066917 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre06.g272650 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
Cre06.g278213 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.01 Archaeplastida
Cre06.g283050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Cre07.g344950 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.03 Archaeplastida
Cre10.g425900 No alias Chlorophyll a-b binding protein 4, chloroplastic... 0.02 Archaeplastida
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.01 Archaeplastida
Cre11.g467573 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre12.g508750 No alias Photosystem I chlorophyll a/b-binding protein 6,... 0.02 Archaeplastida
Cre16.g673650 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre16.g687900 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre17.g720250 No alias Photosynthesis.photophosphorylation.photosystem... 0.01 Archaeplastida
GSVIVT01007988001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
GSVIVT01009498001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
GSVIVT01010483001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 Archaeplastida
GSVIVT01013450001 No alias Photosynthesis.photophosphorylation.photosystem... 0.06 Archaeplastida
GSVIVT01015045001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.09 Archaeplastida
GSVIVT01016295001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
GSVIVT01019377001 No alias Photosystem I chlorophyll a/b-binding protein 3-1,... 0.04 Archaeplastida
GSVIVT01021406001 No alias Chlorophyll a-b binding protein 2, chloroplastic... 0.02 Archaeplastida
GSVIVT01029789001 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
GSVIVT01030053001 No alias Chlorophyll a-b binding protein 151, chloroplastic... 0.03 Archaeplastida
Gb_10163 No alias component LHCa3 of LHC-I complex 0.03 Archaeplastida
Gb_18375 No alias component LHCa1 of LHC-I complex 0.02 Archaeplastida
Gb_30379 No alias Chlorophyll a-b binding protein CP26, chloroplastic... 0.04 Archaeplastida
Gb_32082 No alias component LHCa2 of LHC-I complex 0.05 Archaeplastida
Gb_38595 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
MA_10431300g0010 No alias Chlorophyll a-b binding protein type I, chloroplastic... 0.02 Archaeplastida
MA_10431300g0020 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
MA_10431493g0010 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
MA_129206g0010 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
MA_176279g0010 No alias component LHCb5 of LHC-II complex 0.05 Archaeplastida
MA_18273g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_65346g0010 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.02 Archaeplastida
MA_815900g0010 No alias component LHCa3 of LHC-I complex 0.04 Archaeplastida
MA_9388552g0010 No alias Chlorophyll a-b binding protein type 2 member 2... 0.02 Archaeplastida
MA_97315g0010 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.02 Archaeplastida
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.04 Archaeplastida
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.03 Archaeplastida
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.02 Archaeplastida
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.08 Archaeplastida
Mp7g06780.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.04 Archaeplastida
Pp3c10_25360V3.1 No alias photosystem I light harvesting complex gene 2 0.02 Archaeplastida
Pp3c10_25450V3.1 No alias photosystem I light harvesting complex gene 2 0.02 Archaeplastida
Pp3c12_19200V3.1 No alias photosystem I light harvesting complex gene 2 0.12 Archaeplastida
Pp3c12_25430V3.1 No alias light harvesting complex photosystem II 0.02 Archaeplastida
Pp3c12_25460V3.1 No alias light harvesting complex photosystem II 0.02 Archaeplastida
Pp3c13_14980V3.1 No alias photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Pp3c16_16040V3.1 No alias photosystem I light harvesting complex gene 3 0.03 Archaeplastida
Pp3c19_20900V3.1 No alias light-harvesting chlorophyll B-binding protein 3 0.02 Archaeplastida
Pp3c1_34240V3.1 No alias light harvesting complex photosystem II subunit 6 0.02 Archaeplastida
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c22_5610V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 Archaeplastida
Pp3c2_36190V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c2_36500V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c4_11854V3.1 No alias photosystem I light harvesting complex gene 5 0.1 Archaeplastida
Pp3c4_28370V3.1 No alias light harvesting complex of photosystem II 5 0.02 Archaeplastida
Pp3c4_5680V3.1 No alias light harvesting complex photosystem II 0.02 Archaeplastida
Pp3c4_5690V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c6_6830V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Smo104804 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Smo149722 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Smo160411 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Smo423144 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
Smo444370 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Smo446130 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Smo75552 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Solyc07g022900.4.1 No alias component LHCa5 of LHC-I complex 0.06 Archaeplastida
Solyc09g014520.3.1 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
Solyc12g009200.2.1 No alias component LHCa6 of LHC-I complex 0.1 Archaeplastida
Zm00001e004129_P001 No alias component LHCa4 of LHC-I complex 0.04 Archaeplastida
Zm00001e004940_P001 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Zm00001e004941_P001 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Zm00001e006561_P001 No alias component LHCb6 of LHC-II complex 0.1 Archaeplastida
Zm00001e009885_P001 No alias component LHCa6 of LHC-I complex 0.15 Archaeplastida
Zm00001e010547_P001 No alias component LHCb4 of LHC-II complex 0.04 Archaeplastida
Zm00001e011045_P002 No alias component LHCb5 of LHC-II complex 0.05 Archaeplastida
Zm00001e013742_P001 No alias component LHCa1 of LHC-I complex 0.07 Archaeplastida
Zm00001e015945_P001 No alias component LHCa5 of LHC-I complex 0.08 Archaeplastida
Zm00001e021290_P001 No alias component LHCb5 of LHC-II complex 0.05 Archaeplastida
Zm00001e022453_P001 No alias component LHCa4 of LHC-I complex 0.05 Archaeplastida
Zm00001e025141_P001 No alias component LHCa1 of LHC-I complex 0.05 Archaeplastida
Zm00001e026547_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e032450_P001 No alias Chlorophyll a-b binding protein, chloroplastic OS=Zea... 0.06 Archaeplastida
Zm00001e034922_P001 No alias Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... 0.05 Archaeplastida
Zm00001e035235_P001 No alias component LHCb4 of LHC-II complex 0.06 Archaeplastida
Zm00001e035249_P001 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Zm00001e035349_P002 No alias component LHCa2 of LHC-I complex 0.06 Archaeplastida
Zm00001e041918_P001 No alias component LHCb6 of LHC-II complex 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006772 thiamine metabolic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009228 thiamine biosynthetic process IEP Neighborhood
CC GO:0009512 cytochrome b6f complex IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016778 diphosphotransferase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042723 thiamine-containing compound metabolic process IEP Neighborhood
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0051920 peroxiredoxin activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 68 234
No external refs found!