1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os09g39270.1

LOC_Os09g39270.1


Description : component Pcf11 of Cleavage Factor II (CF-IIm) complex


Gene families : OG0001781 (Archaeplastida) Phylogenetic Tree(s): OG0001781_tree ,
OG_05_0002038 (LandPlants) Phylogenetic Tree(s): OG_05_0002038_tree ,
OG_06_0001962 (SeedPlants) Phylogenetic Tree(s): OG_06_0001962_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g39270.1
Cluster HCCA: Cluster_359

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00210200 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.08 Archaeplastida
AT2G36480 No alias ENTH/VHS family protein 0.05 Archaeplastida
AT4G04885 PCFS4 PCF11P-similar protein 4 0.03 Archaeplastida
Cpa|evm.model.tig00000396.25 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.02 Archaeplastida
Cpa|evm.model.tig00000396.26 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.01 Archaeplastida
GSVIVT01012646001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.09 Archaeplastida
GSVIVT01033783001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.06 Archaeplastida
Gb_21315 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.07 Archaeplastida
Gb_26268 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.1 Archaeplastida
MA_10040687g0010 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.07 Archaeplastida
MA_10433250g0020 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.06 Archaeplastida
MA_132868g0010 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.06 Archaeplastida
Mp8g18940.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.07 Archaeplastida
Pp3c16_6360V3.1 No alias PCF11P-similar protein 4 0.02 Archaeplastida
Pp3c16_6390V3.1 No alias PCF11P-similar protein 4 0.03 Archaeplastida
Solyc09g009120.4.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.09 Archaeplastida
Solyc10g083590.2.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.09 Archaeplastida
Solyc12g094490.2.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.03 Archaeplastida
Zm00001e009485_P001 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.11 Archaeplastida
Zm00001e021648_P002 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.15 Archaeplastida
Zm00001e033620_P001 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.13 Archaeplastida
Zm00001e039948_P002 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0007088 regulation of mitotic nuclear division IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0033045 regulation of sister chromatid segregation IEP Neighborhood
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0051783 regulation of nuclear division IEP Neighborhood
BP GO:0051983 regulation of chromosome segregation IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901987 regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Neighborhood
BP GO:1905818 regulation of chromosome separation IEP Neighborhood
InterPro domains Description Start Stop
IPR006903 RNA_pol_II-bd 110 163
No external refs found!