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  5. LOC_Os10g35930.1

LOC_Os10g35930.1


Description : transcription factor (LIM)


Gene families : OG0000926 (Archaeplastida) Phylogenetic Tree(s): OG0000926_tree ,
OG_05_0000998 (LandPlants) Phylogenetic Tree(s): OG_05_0000998_tree ,
OG_06_0003083 (SeedPlants) Phylogenetic Tree(s): OG_06_0003083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g35930.1
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.LIM... 0.11 Archaeplastida
AMTR_s00065p00168710 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.LIM... 0.04 Archaeplastida
AT1G01780 No alias GATA type zinc finger transcription factor family protein 0.1 Archaeplastida
AT1G10200 WLIM1 GATA type zinc finger transcription factor family protein 0.03 Archaeplastida
AT2G39900 No alias GATA type zinc finger transcription factor family protein 0.03 Archaeplastida
AT2G45800 No alias GATA type zinc finger transcription factor family protein 0.11 Archaeplastida
AT3G61230 No alias GATA type zinc finger transcription factor family protein 0.08 Archaeplastida
GSVIVT01007812001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.04 Archaeplastida
GSVIVT01016382001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.03 Archaeplastida
GSVIVT01019807001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.07 Archaeplastida
GSVIVT01026849001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.03 Archaeplastida
GSVIVT01037819001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.04 Archaeplastida
Gb_09450 No alias transcription factor (LIM) 0.05 Archaeplastida
Gb_11447 No alias transcription factor (LIM) 0.03 Archaeplastida
LOC_Os06g13030.1 No alias transcription factor (LIM) 0.04 Archaeplastida
MA_10428887g0010 No alias transcription factor (LIM) 0.04 Archaeplastida
MA_104604g0010 No alias transcription factor (LIM) 0.02 Archaeplastida
Solyc01g094320.3.1 No alias transcription factor (LIM) 0.05 Archaeplastida
Solyc03g114000.3.1 No alias transcription factor (LIM) 0.03 Archaeplastida
Solyc05g049870.3.1 No alias transcription factor (LIM) 0.02 Archaeplastida
Solyc08g007940.4.1 No alias transcription factor (LIM) 0.03 Archaeplastida
Solyc08g080740.3.1 No alias transcription factor (LIM) 0.04 Archaeplastida
Solyc10g017520.3.1 No alias transcription factor (LIM) 0.03 Archaeplastida
Solyc11g044740.2.1 No alias transcription factor (LIM) 0.04 Archaeplastida
Zm00001e007423_P001 No alias transcription factor (LIM) 0.1 Archaeplastida
Zm00001e015234_P001 No alias transcription factor (LIM) 0.13 Archaeplastida
Zm00001e023098_P001 No alias transcription factor (LIM) 0.19 Archaeplastida
Zm00001e029431_P002 No alias transcription factor (LIM) 0.02 Archaeplastida
Zm00001e041310_P001 No alias transcription factor (LIM) 0.12 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030570 pectate lyase activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001781 Znf_LIM 104 159
IPR001781 Znf_LIM 10 65
No external refs found!