LOC_Os10g38850.1


Description : lysine-specific demethylase (LDL3)


Gene families : OG0004598 (Archaeplastida) Phylogenetic Tree(s): OG0004598_tree ,
OG_05_0003372 (LandPlants) Phylogenetic Tree(s): OG_05_0003372_tree ,
OG_06_0004545 (SeedPlants) Phylogenetic Tree(s): OG_06_0004545_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g38850.1
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AT4G16310 LDL3 LSD1-like 3 0.05 Archaeplastida
GSVIVT01009833001 No alias Lysine-specific histone demethylase 1 homolog 3... 0.08 Archaeplastida
GSVIVT01009834001 No alias Lysine-specific histone demethylase 1 homolog 3... 0.07 Archaeplastida
MA_120420g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_120420g0020 No alias lysine-specific demethylase (LDL3) 0.07 Archaeplastida
Pp3c1_1170V3.1 No alias LSD1-like 3 0.05 Archaeplastida
Pp3c1_6380V3.1 No alias LSD1-like 3 0.04 Archaeplastida
Pp3c2_35420V3.1 No alias LSD1-like 3 0.05 Archaeplastida
Pp3c2_35433V3.1 No alias LSD1-like 3 0.04 Archaeplastida
Smo405878 No alias Chromatin organisation.histone modifications.histone... 0.04 Archaeplastida
Solyc04g081100.3.1 No alias lysine-specific demethylase (LDL3) 0.04 Archaeplastida
Zm00001e002184_P001 No alias lysine-specific demethylase (LDL3) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR007526 SWIRM 527 607
IPR002937 Amino_oxidase 775 1255
No external refs found!