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  5. AMTR_s00011p00233950

AMTR_s00011p00233950


Description : Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana


Gene families : OG0011967 (Archaeplastida) Phylogenetic Tree(s): OG0011967_tree ,
OG_05_0010015 (LandPlants) Phylogenetic Tree(s): OG_05_0010015_tree ,
OG_06_0010840 (SeedPlants) Phylogenetic Tree(s): OG_06_0010840_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00233950
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01023966001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
MA_10211068g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 491 516
IPR002885 Pentatricopeptide_repeat 316 364
IPR002885 Pentatricopeptide_repeat 288 315
IPR002885 Pentatricopeptide_repeat 216 245
IPR002885 Pentatricopeptide_repeat 558 587
IPR002885 Pentatricopeptide_repeat 390 413
IPR002885 Pentatricopeptide_repeat 420 446
IPR002885 Pentatricopeptide_repeat 183 210
No external refs found!