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  5. AMTR_s00011p00265800

AMTR_s00011p00265800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.222

Description : Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0006433 (Archaeplastida) Phylogenetic Tree(s): OG0006433_tree ,
OG_05_0005096 (LandPlants) Phylogenetic Tree(s): OG_05_0005096_tree ,
OG_06_0005733 (SeedPlants) Phylogenetic Tree(s): OG_06_0005733_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00265800
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
AT3G18110 EMB1270 Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
GSVIVT01024457001 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.05 Archaeplastida
LOC_Os06g09880.1 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.04 Archaeplastida
MA_712594g0010 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.03 Archaeplastida
Solyc03g096830.4.1 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.03 Archaeplastida
Zm00001e036242_P002 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 439 469
IPR002885 Pentatricopeptide_repeat 1175 1204
IPR002885 Pentatricopeptide_repeat 1142 1169
IPR002885 Pentatricopeptide_repeat 860 888
IPR002885 Pentatricopeptide_repeat 934 958
IPR002885 Pentatricopeptide_repeat 294 340
IPR002885 Pentatricopeptide_repeat 1035 1079
IPR002885 Pentatricopeptide_repeat 473 518
IPR002885 Pentatricopeptide_repeat 366 413
IPR002885 Pentatricopeptide_repeat 545 588
IPR002885 Pentatricopeptide_repeat 1105 1136
No external refs found!