AMTR_s00012p00243090 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00012.223

Description : RNA biosynthesis.transcriptional activation.WRKY transcription factor

Gene families : OG0000007 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000005 (LandPlants) Phylogenetic Tree(s): OG_05_0000005_tree ,
OG_06_0000033 (SeedPlants) Phylogenetic Tree(s): OG_06_0000033_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00012p00243090
Cluster	HCCA: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
AT1G64000	WRKY56, ATWRKY56	WRKY DNA-binding protein 56	0.03	Archaeplastida
AT5G41570	ATWRKY24, WRKY24	WRKY DNA-binding protein 24	0.03	Archaeplastida
GSVIVT01001332001	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.03	Archaeplastida
GSVIVT01026969001	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.05	Archaeplastida
GSVIVT01028823001	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.04	Archaeplastida
GSVIVT01029688001	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.04	Archaeplastida
GSVIVT01037686001	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.04	Archaeplastida
Gb_01873	No alias	transcription factor (WRKY)	0.02	Archaeplastida
Gb_06156	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Gb_17074	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Gb_41027	No alias	transcription factor (WRKY)	0.03	Archaeplastida
LOC_Os01g09080.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
LOC_Os01g47560.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
LOC_Os01g60490.1	No alias	transcription factor (WRKY)	0.04	Archaeplastida
LOC_Os04g46060.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
LOC_Os05g45230.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
LOC_Os05g49100.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
LOC_Os06g06360.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
LOC_Os06g30860.1	No alias	transcription factor (WRKY)	0.04	Archaeplastida
LOC_Os08g13840.2	No alias	transcription factor (WRKY)	0.03	Archaeplastida
LOC_Os12g02420.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
MA_101135g0010	No alias	transcription factor (WRKY)	0.02	Archaeplastida
MA_125146g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_426605g0010	No alias	transcription factor (WRKY)	0.02	Archaeplastida
MA_83250g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_934202g0010	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Pp3c12_4260V3.1	No alias	WRKY family transcription factor	0.03	Archaeplastida
Pp3c13_15520V3.1	No alias	WRKY family transcription factor	0.02	Archaeplastida
Pp3c1_40230V3.1	No alias	WRKY DNA-binding protein 11	0.04	Archaeplastida
Solyc04g072070.3.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc05g053380.4.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc06g048870.3.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
Solyc07g055280.4.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc08g067340.4.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc08g081630.2.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
Solyc10g005680.2.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc10g007970.2.1	No alias	transcription factor (WRKY)	0.04	Archaeplastida
Solyc10g084380.1.1	No alias	transcription factor (WRKY)	0.06	Archaeplastida
Zm00001e015292_P001	No alias	No annotation	0.03	Archaeplastida
Zm00001e018038_P001	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Zm00001e018502_P001	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Zm00001e019908_P001	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Zm00001e025758_P001	No alias	transcription factor (WRKY)	0.05	Archaeplastida
Zm00001e027460_P001	No alias	transcription factor (WRKY)	0.04	Archaeplastida
Zm00001e029092_P002	No alias	transcription factor (WRKY)	0.05	Archaeplastida
Zm00001e032189_P001	No alias	transcription factor (WRKY)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
MF	GO:0008146	sulfotransferase activity	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	111	167

External Links

No external refs found!

AMTR_s00012p00243090 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation