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  4. Sequence
  5. Smo137726

Smo137726


Description : Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.membrane subcomplex M.NdhB component


Gene families : OG0001688 (Archaeplastida) Phylogenetic Tree(s): OG0001688_tree ,
OG_05_0001178 (LandPlants) Phylogenetic Tree(s): OG_05_0001178_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo137726
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00105080 evm_27.TU.AmTr_v1... NAD(P)H-quinone oxidoreductase subunit 2 A,... 0.07 Archaeplastida
AMTR_s00543p00012290 evm_27.TU.AmTr_v1... NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.08 Archaeplastida
ATCG00890 NDHB.1 NADH-Ubiquinone/plastoquinone (complex I) protein 0.2 Archaeplastida
ATCG01250 NDHB.2 NADH-Ubiquinone/plastoquinone (complex I) protein 0.2 Archaeplastida
Gb_17281 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.14 Archaeplastida
Gb_18608 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.14 Archaeplastida
Gb_26291 No alias component NdhB of NDH membrane subcomplex M 0.13 Archaeplastida
LOC_Os04g16854.1 No alias component NdhB of NDH membrane subcomplex M 0.03 Archaeplastida
LOC_Os07g25004.1 No alias component NdhB of NDH membrane subcomplex M 0.23 Archaeplastida
LOC_Os08g15248.1 No alias component NdhB of NDH membrane subcomplex M 0.23 Archaeplastida
Solyc00g500146.1.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.18 Archaeplastida
Solyc03g122010.1.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.25 Archaeplastida
Solyc09g050069.1.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 A,... 0.24 Archaeplastida
Solyc09g050070.1.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 A,... 0.21 Archaeplastida
Solyc10g061887.1.1 No alias component NdhB of NDH membrane subcomplex M 0.24 Archaeplastida
Solyc11g021090.3.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.24 Archaeplastida
Solyc11g021110.3.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.03 Archaeplastida
Solyc12g033020.1.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.12 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
BP GO:0019684 photosynthesis, light reaction IEP Neighborhood
CC GO:0031360 intrinsic component of thylakoid membrane IEP Neighborhood
CC GO:0031361 integral component of thylakoid membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001750 ND/Mrp_mem 155 453
No external refs found!