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Heatmap: Cluster_27 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
0.52 0.27 1.92 -0.33 -0.32 1.24 -1.63 -0.55 0.11 -0.65 -0.36 -0.04 -4.53 -4.46 - -4.35 0.02 0.63 -1.48 2.45 0.98 - -1.14 -2.09 -0.36 -1.06 -0.43 0.58 -0.41 -0.83 -0.59 -1.03
1.59 1.02 1.43 0.21 0.62 1.07 0.41 0.3 0.76 0.56 0.63 0.97 -7.46 -3.43 -6.22 -4.85 -0.68 -0.48 -1.91 0.23 0.23 - -1.83 -2.37 -1.82 -0.17 -0.7 0.05 -0.28 -0.92 -0.25 -0.57
1.45 -0.15 1.33 0.65 1.49 1.3 -0.13 0.2 -0.02 0.12 0.07 0.49 -5.04 -1.41 -1.65 -2.7 0.55 0.61 -1.11 0.8 - - -1.14 -2.4 -0.9 -0.2 -1.08 -1.04 -0.14 -0.25 -0.35 -0.32
1.33 0.89 2.08 0.46 -0.29 0.41 -1.16 -0.9 -0.42 0.46 -1.06 -0.15 - -1.05 -2.3 - -1.45 3.03 -0.77 -1.72 - - -2.93 -2.11 - 0.75 -0.19 -0.37 -2.97 -2.01 -0.68 -0.74
0.62 0.27 1.99 0.03 0.36 1.44 -0.33 0.31 0.56 -0.19 0.71 -0.3 -2.98 -1.63 -3.34 -2.46 -1.0 2.28 -1.24 -3.61 - 0.69 -2.7 -1.88 -2.44 -1.43 -1.62 0.06 0.23 -1.65 -0.2 -0.91
0.74 0.56 0.51 -0.33 0.32 0.45 -0.63 -0.25 -0.2 -0.48 0.14 0.12 -6.85 -4.89 -4.77 -4.09 1.32 -1.3 -0.28 -3.98 -3.12 - 0.35 -0.32 -1.06 -0.17 -0.5 -0.11 1.5 0.77 1.5 1.19
0.96 0.1 0.05 -0.46 0.88 0.71 -0.53 -0.19 0.5 0.37 -0.83 0.34 -2.16 0.09 0.83 -2.33 -0.75 1.47 -1.01 -0.41 -0.47 - -0.7 -0.91 -1.27 0.3 -0.79 0.84 0.02 0.2 0.01 -0.49
1.03 1.08 -0.19 -0.35 0.21 0.36 -0.61 -0.52 0.23 0.18 -0.22 0.11 -1.76 -0.26 -1.19 -3.34 0.86 0.8 -0.68 - - - -0.6 -0.63 0.18 -0.17 -0.26 0.49 0.73 0.51 0.92 0.82
1.61 1.19 1.2 0.19 0.79 1.18 0.05 -0.05 0.69 0.31 0.19 0.47 -6.71 -1.91 -5.02 -4.17 0.7 0.53 -1.25 -2.69 -2.65 - -0.93 -1.64 -3.03 -0.89 -1.01 -0.18 0.34 0.03 0.56 0.08
1.07 1.36 2.19 -0.78 1.57 1.53 -0.14 -0.61 0.44 -0.04 0.3 0.97 - -2.05 -1.76 - -0.57 -0.03 -1.16 - - - -1.11 -1.36 - -2.59 0.17 -0.47 0.2 0.08 0.06 -1.01
1.72 1.05 1.91 -0.02 0.93 1.62 0.18 0.23 0.68 0.67 0.43 0.65 - -2.56 -3.76 -4.84 -0.53 0.42 -2.38 -5.69 -4.31 - -2.09 -2.37 -3.32 -0.33 -0.36 -0.07 -0.12 -0.75 -0.37 -0.79
0.47 0.59 0.65 -0.55 -0.53 0.53 -0.09 -0.48 -0.07 0.3 0.07 0.61 -0.9 -2.19 -1.88 -0.72 -0.57 1.55 -0.55 -2.18 -0.36 1.59 -1.02 -0.71 -0.42 -0.35 -0.35 0.81 -0.6 -0.26 -0.32 -0.15
0.87 0.63 -0.12 -1.19 -0.85 0.85 -0.45 -0.04 -1.03 0.25 0.35 0.18 -3.63 -3.05 -2.7 -4.6 0.18 1.41 -1.44 - - - -1.51 -2.24 1.49 0.13 1.43 1.68 0.61 -0.08 -0.04 -0.41
1.97 0.85 1.82 -0.39 0.77 1.78 0.46 0.67 0.52 0.63 0.01 0.34 - -2.66 -4.34 -2.99 -0.63 0.68 -1.74 - - - -2.1 -3.14 -0.97 -1.56 -1.3 -1.38 0.17 -0.31 -0.25 -0.02
1.46 1.52 0.72 0.15 -0.67 1.15 0.52 0.26 -0.36 -1.16 1.13 1.24 -3.0 -0.28 -1.48 -2.4 -0.95 0.9 -1.13 -1.6 - - -0.91 -1.74 - -1.04 -0.86 0.91 0.24 -0.42 0.02 0.03
1.08 0.89 -2.02 0.82 -2.56 0.45 0.56 -0.11 0.69 1.01 -0.84 1.33 -3.07 -0.32 -1.47 -2.62 -1.59 3.15 -2.46 - -0.32 - -2.78 -1.61 - -1.95 -1.81 -0.8 -0.72 -1.74 -0.66 -0.72
0.5 0.79 0.22 -1.89 -0.74 0.98 -0.69 -0.55 0.13 -0.24 0.57 0.91 -1.82 -1.07 -0.26 -1.32 -0.17 2.74 -0.53 -2.49 - - -1.92 -1.93 - -1.26 -1.96 - 0.98 0.22 1.14 0.35
1.39 0.74 1.2 -0.41 0.37 1.61 0.77 0.36 0.78 -0.37 0.6 0.84 -4.78 -1.09 -2.5 -4.79 0.01 0.79 -1.36 -1.11 -1.7 - -1.9 -1.2 -0.62 -0.6 0.03 0.24 0.13 -0.62 -0.52 -1.88
0.69 1.09 0.25 -1.14 -1.13 1.32 0.23 0.22 0.55 -0.86 -0.08 0.25 -3.8 -0.22 -2.11 -2.66 -0.04 2.34 -1.33 -0.34 -1.21 -0.33 -2.23 -2.93 0.78 -2.5 -1.1 0.31 -0.22 -0.03 -0.03 -0.57
1.52 1.11 1.22 -0.55 -0.01 1.22 0.6 0.34 0.25 0.94 1.06 0.79 - - -1.51 -1.62 -0.58 0.96 -0.83 -2.31 -1.07 - -3.27 - - -0.26 0.25 -0.14 0.07 -2.39 0.39 -0.31
0.52 0.27 1.92 -0.33 -0.32 1.24 -1.63 -0.55 0.11 -0.65 -0.36 -0.04 -4.53 -4.46 - -4.35 0.02 0.63 -1.48 2.45 0.98 - -1.14 -2.09 -0.36 -1.06 -0.43 0.58 -0.41 -0.83 -0.59 -1.03
1.06 0.6 1.18 -0.58 -0.37 0.95 -0.28 0.18 0.26 -0.98 -0.77 0.62 -3.82 -3.49 -2.03 -3.12 0.28 2.75 -1.12 -1.39 - - -0.68 -1.37 -2.23 -2.98 -1.11 -1.23 0.79 -0.13 0.65 0.31
1.4 0.81 1.16 -0.42 0.39 0.59 -0.28 -0.51 0.04 -0.41 0.79 0.41 -5.58 -1.61 -4.01 -3.51 0.0 1.24 -1.28 1.09 - - -1.31 -1.79 - -0.12 -0.51 -0.64 0.89 -0.3 0.95 0.58
1.53 0.65 1.4 0.5 -0.87 1.04 0.72 -0.34 0.58 0.6 0.93 0.62 -2.23 -1.42 -2.46 -4.83 -0.63 1.02 -1.66 - -1.8 - -2.54 -1.28 0.38 0.28 -0.36 0.67 -0.27 -0.76 -0.66 -1.28
1.73 1.1 1.62 -0.04 0.45 1.31 0.41 -0.03 0.98 0.27 0.46 0.45 -4.77 -1.13 -1.56 -4.15 -0.28 0.39 -2.45 -0.31 - - -2.1 -2.19 -3.48 -0.42 -0.86 0.07 0.04 -0.96 0.24 -0.34
1.3 1.06 1.27 0.05 0.79 1.64 0.38 -0.23 0.13 0.48 -0.18 0.41 - -0.32 -1.2 -3.27 0.32 0.75 -2.0 -2.5 - - -1.34 -1.89 -0.95 -0.39 -0.37 -0.28 0.19 -0.41 0.02 0.22
1.26 0.18 0.84 -0.03 -0.12 0.79 -1.22 -1.16 0.47 -0.75 -0.32 -0.25 -2.04 -0.09 -1.65 -1.09 -0.23 1.1 -0.69 0.19 -0.45 1.85 -1.14 -0.99 -1.5 -1.48 -0.36 -0.2 0.58 0.02 -0.22 -0.36
1.1 0.78 1.75 -0.55 0.75 0.93 -0.44 -0.43 0.64 0.23 0.39 0.12 -4.01 -2.55 -2.45 -4.24 -0.21 1.2 -2.3 - 1.58 - -2.03 -2.36 -0.27 -0.35 -0.5 0.1 -0.04 -0.73 -0.04 -0.48
0.29 -1.34 0.31 -1.74 -2.1 0.31 -0.07 -3.15 0.27 0.06 -0.87 0.38 -1.18 -0.31 -2.59 -2.65 0.16 2.09 -0.89 - - 2.25 -1.25 -0.72 -0.1 -0.68 -0.08 -1.51 0.75 0.4 0.66 0.6
1.09 0.07 0.06 0.35 -0.14 -0.58 -0.41 -0.43 -0.31 -0.99 -0.59 -0.08 -3.88 -1.22 -3.13 -1.87 1.22 0.42 1.09 -4.01 -0.96 - 0.77 -0.04 0.65 0.45 -0.5 -0.25 0.5 1.03 0.73 -0.05
0.32 1.09 1.16 -0.86 1.95 0.28 -0.88 0.51 -2.02 -0.86 -0.61 0.06 -2.15 -1.62 -3.05 -2.54 0.21 -0.41 -1.11 0.38 - - 0.13 -0.72 - -1.08 -0.88 0.36 1.17 0.79 1.12 0.7
0.92 0.64 1.09 0.66 0.74 0.98 0.21 0.56 0.4 0.55 0.55 0.46 -2.78 0.36 -1.62 -1.84 -0.58 -0.45 -0.22 -4.09 -4.29 - -0.48 -0.8 -2.87 0.68 0.23 0.93 -0.96 -0.57 -0.61 -0.76
1.49 0.87 1.61 -0.16 0.74 1.47 0.07 -0.36 0.7 0.12 0.16 0.56 -8.17 -2.69 -5.68 -5.33 0.01 0.05 -2.3 0.79 0.05 -3.14 -2.0 -2.23 -0.63 -1.16 -1.22 -0.68 0.25 -0.49 0.15 -0.14
1.56 1.01 1.08 0.23 0.69 1.21 0.11 -0.39 0.85 0.66 0.51 0.84 -7.64 -2.57 -3.92 -3.67 0.05 0.56 -0.83 -3.02 -3.92 -4.62 -1.16 -1.41 -1.92 -0.96 -1.19 -0.32 0.49 -0.16 0.47 0.35
1.01 0.7 -0.1 -0.81 -0.23 -0.09 0.38 -0.82 -0.6 -0.57 -0.63 -0.22 -3.54 -1.2 -1.57 -2.53 0.91 1.15 -0.59 1.62 -2.39 - -0.47 -1.06 0.05 -1.63 -0.99 0.55 1.04 0.65 1.07 0.09
0.77 0.39 0.22 -0.16 -0.82 0.97 -0.42 0.27 0.46 -0.19 0.96 0.9 -2.31 -0.63 -1.96 -1.77 -0.07 1.71 -0.24 - - -3.1 -0.4 -0.32 0.96 -1.99 -1.78 -1.42 0.36 0.52 0.75 -0.05
0.78 0.89 1.06 -0.43 0.1 0.2 -0.16 0.05 0.06 -0.39 -0.03 0.59 -4.1 -1.18 -3.47 -2.67 0.53 0.42 -0.41 -3.98 -3.57 - -0.86 -0.7 -1.13 1.48 0.65 1.92 0.02 -0.1 -0.36 -2.02
1.23 0.18 0.56 0.16 1.31 0.72 0.15 -0.15 0.78 1.05 0.46 0.58 -3.89 -0.93 -1.34 -1.49 -0.94 0.93 -0.86 -1.32 - - -1.28 0.3 1.1 -1.65 -0.48 -1.02 -0.28 -0.6 -0.13 -0.52
1.32 0.2 0.73 1.17 1.45 0.46 0.52 -0.01 0.55 0.76 0.74 0.62 -1.53 -0.9 -0.61 -0.15 -1.93 0.58 -0.5 -3.08 -3.41 - -0.87 0.3 -0.43 -1.46 -2.13 -1.9 -0.19 -0.58 -0.42 -0.41
0.82 0.38 0.38 -0.21 0.91 0.71 -0.21 0.48 1.0 1.07 0.6 -0.4 -1.95 -1.28 -0.98 0.08 -1.38 1.15 -0.29 -1.02 -1.43 - 0.05 0.76 0.0 -2.36 -1.34 -1.91 -0.31 0.21 -0.33 -0.39
0.52 0.27 1.92 -0.33 -0.32 1.24 -1.63 -0.55 0.11 -0.65 -0.36 -0.04 -4.53 -4.46 - -4.35 0.02 0.63 -1.48 2.45 0.98 - -1.14 -2.09 -0.36 -1.06 -0.43 0.58 -0.41 -0.83 -0.59 -1.03
1.79 1.18 1.75 0.41 0.83 1.32 0.45 0.49 1.24 0.77 0.46 0.76 -7.31 - - -5.62 -0.88 1.06 -3.08 -3.41 -1.1 -4.95 -1.91 -2.17 -2.39 -5.15 - -5.15 -0.14 -0.81 -0.02 -0.27
0.71 0.13 0.31 0.1 0.0 0.07 0.17 0.02 0.64 0.15 -0.27 0.3 -2.37 -1.26 -0.76 1.03 -1.12 2.15 0.03 - -2.72 - 0.22 0.62 -0.33 -1.27 -0.65 -0.33 -0.18 0.05 -0.13 -0.94
1.69 1.07 1.82 0.15 0.72 1.46 0.22 0.02 0.77 0.33 0.15 0.54 -4.88 -2.43 -4.39 -3.73 -0.24 0.7 -1.69 -3.13 -2.9 - -1.74 -1.89 -3.24 -0.7 -0.34 -0.23 0.02 -0.41 0.02 -0.22
1.28 -0.68 -0.72 -0.51 -1.2 0.54 - -0.5 -0.63 0.22 - 0.19 -3.35 0.68 -0.58 -23.92 -1.77 0.82 -2.28 - - - -1.2 -1.09 - 2.03 0.95 3.0 -0.28 -0.87 -0.12 -2.01
1.76 1.2 1.92 0.4 1.02 1.4 0.62 0.66 1.15 0.73 0.84 0.97 -10.14 -3.15 -5.83 -6.83 -1.17 0.28 -3.7 -4.7 -3.11 - -2.8 -2.72 -3.2 -0.92 -1.34 -1.26 -0.86 -1.31 -0.83 -1.0
1.51 0.83 1.52 0.0 0.32 1.38 -0.23 -0.52 0.53 -0.02 -0.07 0.33 -4.14 -1.73 -2.92 -3.07 -0.02 0.58 -1.85 2.03 - - -2.08 -2.26 -2.37 -0.31 -1.35 -0.61 0.01 -0.58 -0.01 -0.2
0.98 1.24 1.24 -0.85 0.77 1.19 0.54 0.2 0.49 0.19 0.17 0.72 - -2.06 -3.52 -2.85 0.83 1.38 -1.67 -2.09 - - -0.34 -0.81 - -1.34 -1.08 -0.79 0.07 -0.41 0.64 0.36
1.28 -0.68 -0.72 -0.51 -1.2 0.54 - -0.5 -0.63 0.22 - 0.19 -3.35 0.68 -0.58 -23.92 -1.77 0.82 -2.28 - - - -1.2 -1.09 - 2.03 0.95 3.0 -0.28 -0.87 -0.12 -2.01
1.28 -0.68 -0.72 -0.51 -1.2 0.54 - -0.5 -0.63 0.22 - 0.19 -3.35 0.68 -0.58 -23.92 -1.77 0.82 -2.28 - - - -1.2 -1.09 - 2.03 0.95 3.0 -0.28 -0.87 -0.12 -2.01
1.4 1.11 1.23 0.62 -0.88 0.27 -0.16 0.17 0.73 0.61 0.83 0.53 -3.85 -2.33 -2.84 -2.13 -0.61 1.86 -0.0 - - - -1.3 -0.56 -1.72 -0.47 -0.37 - 0.46 0.58 0.09 -1.31
1.93 1.46 2.2 1.04 1.05 1.32 0.42 0.69 0.83 0.47 0.25 0.32 - - -2.59 - -0.2 -0.48 -2.86 - - - -2.72 - - - - 1.03 -1.41 -2.85 -1.29 -0.63
1.53 -1.03 1.93 1.35 0.19 -0.8 - - 0.1 0.38 0.64 -0.03 -0.88 - - - 1.07 1.93 0.0 - - - 1.1 -0.0 - - - - 1.0 -0.97 1.02 -1.04
-3.31 -1.63 - -2.38 0.39 -1.42 -1.66 - -0.02 - -0.23 -0.74 -2.1 -1.54 -1.1 - - 2.98 1.32 - - 3.46 - - - -0.2 -0.66 1.5 - -2.26 - -
1.05 0.86 0.2 0.17 0.34 -0.55 -0.38 -0.47 0.42 -0.07 0.62 -0.01 - -0.35 -4.34 -2.23 0.6 0.13 0.45 0.61 -1.3 - -2.82 -2.66 -0.59 0.33 -1.59 -0.53 0.71 1.24 0.63 0.86
1.51 0.84 1.17 0.8 1.35 1.2 0.56 1.51 1.64 0.91 0.8 1.02 -3.28 -4.34 -3.66 -1.48 -4.62 - -1.32 - - - -0.67 -1.27 -0.34 0.15 -2.12 -0.3 -2.29 -3.59 -3.02 -
1.51 0.43 1.07 0.74 0.75 0.3 0.08 0.96 0.07 1.18 0.7 1.17 -0.08 -0.91 -1.56 -1.23 -1.24 0.67 -0.49 - -1.87 - -0.6 -0.31 0.19 -2.64 -2.0 -1.26 -0.54 -0.48 -0.89 -1.7
0.62 0.17 0.66 0.93 0.44 -1.5 -0.24 -0.21 0.67 0.86 1.14 1.24 -2.1 -2.14 -1.52 -1.24 -1.24 -3.39 -1.83 2.46 2.32 -29.06 -30.07 -29.79 - -5.47 -0.88 -0.5 -2.74 -2.44 -3.11 -2.35
-0.03 -0.55 0.26 0.51 0.92 0.22 0.72 -0.37 1.04 0.18 0.88 0.02 -1.04 -1.07 -2.75 -2.57 0.15 0.03 0.12 -0.07 -1.93 -1.37 0.61 0.72 0.16 -1.72 -2.74 - 0.5 0.02 1.05 -0.26
-0.39 0.15 0.04 -0.09 -0.52 0.48 0.15 0.6 0.27 0.46 0.24 0.27 -1.82 -1.46 -0.02 0.05 -0.19 1.12 -0.02 -1.98 -1.46 1.49 -0.4 -0.38 0.32 -0.34 0.25 0.12 -0.71 -0.53 -0.59 -0.9
1.48 1.13 0.37 1.39 1.29 1.2 0.35 1.54 1.34 1.15 1.55 0.87 -8.59 - - -7.76 -6.91 1.76 -5.4 -10.29 - - -4.66 -4.18 -4.41 -1.69 -4.82 -0.55 -5.33 -5.95 -4.51 -6.27
1.05 0.31 0.39 -0.23 1.18 0.81 0.54 0.35 1.02 0.37 0.66 1.03 - -0.89 -2.84 - -0.2 1.12 -1.14 -0.17 -0.2 - -2.0 -0.82 0.26 -3.11 -1.18 -1.89 0.55 -0.43 -0.25 0.03
1.05 0.31 0.39 -0.23 1.18 0.81 0.54 0.35 1.02 0.37 0.66 1.03 - -0.89 -2.84 - -0.2 1.12 -1.14 -0.17 -0.2 - -2.0 -0.82 0.26 -3.11 -1.18 -1.89 0.55 -0.43 -0.25 0.03
1.61 1.58 -0.32 -0.89 -0.76 0.86 0.3 -1.48 -0.46 1.44 0.39 1.44 -3.73 -1.63 -2.8 - -0.27 0.61 -0.87 - - - -1.21 -1.88 -1.76 -0.19 -1.4 0.42 0.8 -0.15 1.03 0.52
0.79 0.25 1.18 -0.5 1.47 1.49 -3.01 -1.58 -0.23 -0.66 0.25 0.41 - - - -2.92 0.41 2.37 -0.8 - - - -1.33 -1.08 - - -1.65 - 1.19 0.68 0.86 0.97

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.